Evidence map›Paper›PMID 34924992›Full record

ArticleFrontiers in aging neuroscience2021

Transcriptomic Changes Highly Similar to Alzheimer's Disease Are Observed in a Subpopulation of Individuals During Normal Brain Aging.

Shouneng Peng, Lu Zeng, Jean-Vianney Haure-Mirande, Minghui Wang, Derek M Huffman, Vahram Haroutunian, Michelle E Ehrlich, Bin Zhang, Zhidong Tu

Open access · goldAbstract read
In one paragraph

Article in Frontiers in aging neuroscience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
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  12. Neuronal activation of GCell reports · 2023
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  16. Microglia in Alzheimer's Disease: a Key Player in the Transition Between Homeostasis and Pathogenesis.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2022
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Shouneng PengInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York City, NY, United States.
Lu ZengInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York City, NY, United States.
Jean-Vianney Haure-MirandeDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York City, NY, United States.
Minghui WangInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York City, NY, United States.
Derek M HuffmanDepartment of Medicine, Albert Einstein College of Medicine, New York City, NY, United States.
Vahram HaroutunianDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York City, NY, United States.
Michelle E EhrlichDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, United States.
Bin ZhangInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York City, NY, United States.
Zhidong TuInstitute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York City, NY, United States.
Icahn School of Medicine at Mount Sinai · USAlbert Einstein College of Medicine · USMental Illness Research, Education and Clinical Centers · US

Funding

Einstein's Nathan Shock Center of Excellence in Basic Biology of AgingP30AG038072 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI HUFFMAN, DEREK MAJOR · 2010 to 2024
$10.8M
A systems approach for identifying geroprotector synergy in Alzheimer's diseaseeR01AG067312 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI HUFFMAN, DEREK MAJOR, TU, ZHIDONG · 2020 to 2024
$2.8M
Human tissue specific age-related gene expression changes, their genetic regulations and the link to human diseasesR01AG055501 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI TU, ZHIDONG · 2018 to 2022
$2.2M
NIA NIH HHS P30 AG038072NIA NIH HHS R01 AG055501NIA NIH HHS R01 AG067312
6 · The paper itself

Abstract

Aging is a major risk factor for late-onset Alzheimer's disease (LOAD). How aging contributes to the development of LOAD remains elusive. In this study, we examined multiple large-scale transcriptomic datasets from both normal aging and LOAD brains to understand the molecular interconnection between aging and LOAD. We found that shared gene expression changes between aging and LOAD are mostly seen in the hippocampal and several cortical regions. In the hippocampus, the expression of phosphoprotein, alternative splicing and cytoskeleton genes are commonly changed in both aging and AD, while synapse, ion transport, and synaptic vesicle genes are commonly down-regulated. Aging-specific changes are associated with acetylation and methylation, while LOAD-specific changes are more related to glycoprotein (both up- and down-regulations), inflammatory response (up-regulation), myelin sheath and lipoprotein (down-regulation). We also found that normal aging brain transcriptomes from relatively young donors (45-70 years old) clustered into several subgroups and some subgroups showed gene expression changes highly similar to those seen in LOAD brains. Using brain transcriptomic datasets from another cohort of older individuals (>70 years), we found that samples from cognitively normal older individuals clustered with the "healthy aging" subgroup while AD samples mainly clustered with the "AD similar" subgroups. This may imply that individuals in the healthy aging subgroup will likely remain cognitively normal when they become older and vice versa. In summary, our results suggest that on the transcriptome level, aging and LOAD have strong interconnections in some brain regions in a subpopulation of cognitively normal aging individuals. This supports the theory that the initiation of LOAD occurs decades earlier than the manifestation of clinical phenotype and it may be essential to closely study the "normal brain aging" to identify the very early molecular events that may lead to LOAD development.

Indexed as

aging brainbrain aging subgroupsbrain regionshippocampushuman brain transcriptomelate-onset Alzheimer’s diseasemeta-analysisRNAseq

Identifiers

PMID34924992
PMCPMC8675870
OpenAlexW4205348387

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.