Evidence map›Paper›PMID 34923982›Full record

ArticleBMC pulmonary medicine2021

Expression signature, prognosis value and immune characteristics of cathepsin F in non-small cell lung cancer identified by bioinformatics assessment.

Liyuan Song, Xianhui Wang, Wang Cheng, Yi Wu, Min Liu, Ruizi Liu, Shenyi Zhang, Hong Xia, Hao Liu, Xuejiao Tai and 3 more

Abstract readComparative Study
In one paragraph

Article in BMC pulmonary medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. ZEPPI: Proteome-scale sequence-based evaluation of protein-protein interaction models.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Journal of thoracic disease · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Liyuan Song *Department of Medical Biology, School of Basic Medical Science, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China.
Xianhui Wang *Institute of Biomedical Research, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China.
Wang ChengDepartment of Medical Biology, School of Basic Medical Science, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China.
Yi WuDepartment of Medical Biology, School of Basic Medical Science, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China.
Min LiuTaihe Hospital, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China.
Ruizi LiuSchool of Clinical Medicine, Shandong First Medical University, Jinan, 250000, Shandong Province, China.
Shenyi ZhangDepartment of Medical Biology, School of Basic Medical Science, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China.
Hong XiaDepartment of Medical Biology, School of Basic Medical Science, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China.
Hao LiuDepartment of Medical Biology, School of Basic Medical Science, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China.
Xuejiao TaiDepartment of Pathology, School of Basic Medical Science, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China.
Huzi ZhaoDepartment of Pathology, School of Basic Medical Science, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China.
Xihua LiDepartment of Medical Biology, School of Basic Medical Science, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China. lxihua2018@hbmu.edu.cn.
Fuyun JiDepartment of Medical Biology, School of Basic Medical Science, Hubei University of Medicine, Shiyan, 442000, Hubei Province, China. jifuyun@263.net.

Funding

the Cultivating Project for Young Scholar at Hubei University of Medicine 2018QDJZR01
6 · The paper itself

Abstract

backgroundIn recent years, immunotherapies and targeted therapies contribute to population-level improvement in NSCLC cancer-specific survival, however, the two novel therapeutic options have mainly benefit patients containing mutated driven genes. Thus, to explore other potential genes related with immunity or targeted therapies may provide novel options to improve survival of lung cancer patients without mutated driven genes. CTSF is unique in human cysteine proteinases. Presently, CTSF has been detected in several cell lines of lung cancer, but its role in progression and prognosis of lung cancer remains unclear.

methodsCTSF expression and clinical datasets of lung cancer patients were obtained from GTEx, TIMER, CCLE, THPA, and TCGA, respectively. Association of CTSF expression with clinicopathological parameters and prognosis of lung cancer patients was analyzed using UALCAN and Kaplan-Meier Plotter, respectively. LinkedOmics were used to analyze correlation between CTSF and CTSF co-expressed genes. Protein-protein interaction and gene-gene interaction were analyzed using STRING and GeneMANIA, respectively. Association of CTSF with molecular markers of immune cells and immunomodulators was analyzed with Immunedeconv and TISIDB, respectively.

resultsCTSF expression was currently only available for patients with NSCLC. Compared to normal tissues, CTSF was downregulated in NSCLC samples and high expressed CTSF was correlated with favorable prognosis of NSCLC. Additionally, CTSF expression was correlated with that of immune cell molecular markers and immunomodulators both in LUAD and LUSC. Noticeably, high expression of CTSF-related CTLA-4 was found to be associated with better OS of LUAD patients. Increased expression of CTSF-related LAG-3 was related with poor prognosis of LUAD patients while there was no association between CTSF-related PD-1/PD-L1 and prognosis of LUAD patients. Moreover, increased expression of CTSF-related CD27 was related with poor prognosis of LUAD patients while favorable prognosis of LUSC patients.

conclusionsCTSF might play an anti-tumor effect via regulating immune response of NSCLC.

Indexed as

Cathepsin FCTLA-4 AntigenBiomarkers, TumorCarcinoma, Non-Small-Cell LungComputational BiologyDatabases, GeneticDown-RegulationEpistasis, GeneticHumansLung NeoplasmsPrognosisBiomarkers, TumorCathepsin FCTLA-4 AntigenCTSFImmune responseImmunotherapyNSCLCPrognosis

Identifiers

PMID34923982
PMCPMC8686609

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.