Evidence map›Paper›PMID 34921217›Full record

ArticleScientific reports2021

Comparative genome characterization of Echinicola marina sp. nov., isolated from deep-sea sediment provide insight into carotenoid biosynthetic gene cluster evolution.

Yu Pang, Mengru Chen, Wei Lu, Ming Chen, Yongliang Yan, Min Lin, Wei Zhang, Zhengfu Zhou

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Metabolomic Analysis of Carotenoids Biosynthesis byMolecules (Basel, Switzerland) · 2024
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yu Pang *Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Mengru Chen *Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Wei LuBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Ming ChenBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Yongliang YanBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Min LinBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Wei ZhangBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. zhangwei01@caas.cn.
Zhengfu ZhouBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. zhouzhengfu@caas.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Echinicola, carotenoid-pigmented bacteria, are isolated from various hypersaline environments. Carotenoid accumulation in response to salt stress can stabilize the cell membrane in order to survive. A pink-colored strain SCS 3-6 was isolated from the deep-sea sediment of the South China Sea. Growth was found to occur at 10-45 °C. The strain could tolerate 10% (w/v) NaCl concentration and grow at pH 5-9. The complete genome of SCS 3-6 comprises 5053 putative genes with a total 5,693,670 bp and an average G + C content of 40.11 mol%. The 16S rRNA gene sequence analysis indicated that strain SCS 3-6 was affiliated with the genus Echinicola, with the closely strains were Echinicola arenosa CAU 1574

Indexed as

AnimalsBacteroidetesCarotenoidsDNA, BacterialGenomicsGeologic SedimentsMultigene FamilyNucleic Acid HybridizationPhylogenyPolychaetaRNA, Ribosomal, 16SSeawaterSequence Analysis, DNACarotenoidsDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID34921217
PMCPMC8683446

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