Evidence map›Paper›PMID 34919820›Full record

ArticleMolecular cell2021

Rapid characterization of spike variants via mammalian cell surface display.

Kamyab Javanmardi, Chia-Wei Chou, Cynthia I Terrace, Ankur Annapareddy, Tamer S Kaoud, Qingqing Guo, Josh Lutgens, Hayley Zorkic, Andrew P Horton, Elizabeth C Gardner and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Structure-guided engineering of a mutation-tolerant inhibitor peptide against variable SARS-CoV-2 spikes.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. mRNA-LNP vaccine-induced CD8Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  15. Review
  16. Article
  17. Mammalian Antigen Display for Pandemic Countermeasures.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 1 institution in 1 country.

Kamyab JavanmardiDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA. Electronic address: kjavanmardi@utexas.edu.
Chia-Wei ChouDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Cynthia I TerraceCCDC Army Research Laboratory-South, Austin, TX, USA.
Ankur AnnapareddyDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Tamer S KaoudDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, The University of Texas at Austin, Austin, TX, USA.
Qingqing GuoDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Josh LutgensDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Hayley ZorkicDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Andrew P HortonDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Elizabeth C GardnerDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Giaochau NguyenDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Daniel R BoutzCCDC Army Research Laboratory-South, Austin, TX, USA.
Jule GoikeDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
William N VossDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Hung-Che KuoDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.
Kevin N DalbyDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, The University of Texas at Austin, Austin, TX, USA.
Jimmy D GolliharDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA; CCDC Army Research Laboratory-South, Austin, TX, USA; Center for Molecular and Translational Human Infectious Diseases Research, Department of Pathology and Genomic Medicine, Houston Methodist Research Institute, Houston Methodist Hospital, Houston, TX, USA; Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA.
Ilya J FinkelsteinDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA; Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA. Electronic address: ilya@finkelsteinlab.org.
The University of Texas at Austin · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The SARS-CoV-2 spike protein is a critical component of vaccines and a target for neutralizing monoclonal antibodies (nAbs). Spike is also undergoing immunogenic selection with variants that increase infectivity and partially escape convalescent plasma. Here, we describe Spike Display, a high-throughput platform to rapidly characterize glycosylated spike ectodomains across multiple coronavirus-family proteins. We assayed ∼200 variant SARS-CoV-2 spikes for their expression, ACE2 binding, and recognition by 13 nAbs. An alanine scan of all five N-terminal domain (NTD) loops highlights a public epitope in the N1, N3, and N5 loops recognized by most NTD-binding nAbs. NTD mutations in variants of concern B.1.1.7 (alpha), B.1.351 (beta), B.1.1.28 (gamma), B.1.427/B.1.429 (epsilon), and B.1.617.2 (delta) impact spike expression and escape most NTD-targeting nAbs. Finally, B.1.351 and B.1.1.28 completely escape a potent ACE2 mimic. We anticipate that Spike Display will accelerate antigen design, deep scanning mutagenesis, and antibody epitope mapping for SARS-CoV-2 and other emerging viral threats.

Indexed as

AnimalsAntibodies, MonoclonalAntibodies, NeutralizingCell LineCOVID-19EpitopesHEK293 CellsHumansMammalsProtein BindingSARS-CoV-2Spike Glycoprotein, CoronavirusAntibodies, MonoclonalAntibodies, NeutralizingEpitopesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2cell displayCOVID-19N-terminal domainreceptor-binding domainvariants

Identifiers

PMID34919820
PMCPMC8675084
OpenAlexW4226445472

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.