Evidence map›Paper›PMID 34919694›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2022

Migrating a research data warehouse to a public cloud: challenges and opportunities.

Michael G Kahn, Joyce Y Mui, Michael J Ames, Anoop K Yamsani, Nikita Pozdeyev, Nicholas Rafaels, Ian M Brooks

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Observational
  3. Review
  4. Article
  5. Article
  6. Observational
  7. Optimizing the migration of a data warehouse to the cloud using network analysis.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Big Data in Laboratory Medicine-FAIR Quality for AI?Diagnostics (Basel, Switzerland) · 2022
    Review
  12. Research data warehouse best practices: catalyzing national data sharing through informatics innovation.Journal of the American Medical Informatics Association : JAMIA · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Michael G KahnSection of Informatics and Data Science, Department of Pediatrics, University of Colorado School of Medicine, Aurora, CO, USA.ORCID 0000-0003-4786-6875
Joyce Y MuiColorado Center for Personalized Medicine, University of Colorado School of Medicine, Aurora, CO, USA.ORCID 0000-0002-4952-5735
Michael J AmesSADA, Inc., North Hollywood, CA, USA.ORCID 0000-0003-0221-3432
Anoop K YamsaniColorado Center for Personalized Medicine, University of Colorado School of Medicine, Aurora, CO, USA.ORCID 0000-0003-2478-2740
Nikita PozdeyevColorado Center for Personalized Medicine, University of Colorado School of Medicine, Aurora, CO, USA.ORCID 0000-0001-8574-1972
Nicholas RafaelsColorado Center for Personalized Medicine, University of Colorado School of Medicine, Aurora, CO, USA.ORCID 0000-0002-2024-629X
Ian M BrooksColorado Center for Personalized Medicine, University of Colorado School of Medicine, Aurora, CO, USA.ORCID 0000-0003-2724-936X

Funding

NIH Prior Approval Process ProfessionalUL1TR002535 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2018 to 2022
$51.1M
NCATS NIH HHS UL1 TR002535
6 · The paper itself

Abstract

objectiveClinical research data warehouses (RDWs) linked to genomic pipelines and open data archives are being created to support innovative, complex data-driven discoveries. The computing and storage needs of these research environments may quickly exceed the capacity of on-premises systems. New RDWs are migrating to cloud platforms for the scalability and flexibility needed to meet these challenges. We describe our experience in migrating a multi-institutional RDW to a public cloud. MATERIALS AND

methodsThis study is descriptive. Primary materials included internal and public presentations before and after the transition, analysis documents, and actual billing records. Findings were aggregated into topical categories.

resultsEight categories of migration issues were identified. Unanticipated challenges included legacy system limitations; network, computing, and storage architectures that realize performance and cost benefits in the face of hyper-innovation, complex security reviews and approvals, and limited cloud consulting expertise. DISCUSSION: Cloud architectures enable previously unavailable capabilities, but numerous pitfalls can impede realizing the full benefits of a cloud environment. Rapid changes in cloud capabilities can quickly obsolete existing architectures and associated institutional policies. Touchpoints with on-premise networks and systems can add unforeseen complexity. Governance, resource management, and cost oversight are critical to allow rapid innovation while minimizing wasted resources and unnecessary costs.

conclusionsMigrating our RDW to the cloud has enabled capabilities and innovations that would not have been possible with an on-premises environment. Notwithstanding the challenges of managing cloud resources, the resulting RDW capabilities have been highly positive to our institution, research community, and partners.

Indexed as

Cloud ComputingData Warehousingbig datacloud computingdata warehousingresearch data governance

Identifiers

PMID34919694
PMCPMC8922165

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.