Evidence map›Paper›PMID 34918745›Full record

ArticleJournal of cell science2022

The histone H4 lysine 20 demethylase DPY-21 regulates the dynamics of condensin DC binding.

Laura Breimann, Ana Karina Morao, Jun Kim, David Sebastian Jimenez, Nina Maryn, Krishna Bikkasani, Michael J Carrozza, Sarah E Albritton, Maxwell Kramer, Lena Annika Street and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of cell science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Analysis of developmental gene expression using smFISH andbioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Laura BreimannDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.ORCID 0000-0001-7702-5749
Ana Karina MoraoDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.ORCID 0000-0003-2194-8071
Jun KimDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.ORCID 0000-0001-9473-3093
David Sebastian JimenezDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.ORCID 0000-0003-0943-9063
Nina MarynDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.ORCID 0000-0002-0975-3354
Krishna BikkasaniDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.ORCID 0000-0002-4000-1863
Michael J CarrozzaDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.
Sarah E AlbrittonDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.ORCID 0000-0001-6093-9560
Maxwell KramerDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.ORCID 0000-0002-1643-0756
Lena Annika StreetDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.ORCID 0000-0002-5473-6713
Kustrim CerimiBerlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, 10115 Berlin, Germany.ORCID 0000-0003-0775-3032
Vic-Fabienne SchumannBerlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, 10115 Berlin, Germany.ORCID 0000-0003-0227-7428
Ella BahryBerlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, 10115 Berlin, Germany.ORCID 0000-0002-6358-2576
Stephan PreibischBerlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, 10115 Berlin, Germany.ORCID 0000-0002-0276-494X
Andrew WoehlerBerlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, 10115 Berlin, Germany.ORCID 0000-0001-5157-9313
Sevinç ErcanDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.ORCID 0000-0001-7297-1648
New York University · USMax Delbrück Center · DEHoward Hughes Medical Institute · US

Funding

TRAINING PROGRAM IN DEVELOPMENTAL GENETICS.T32HD007520 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TREISMAN, JESSICA E · 1999 to 2023
$3.9M
Mechanisms of condensin-mediated gene regulation in C. elegansR35GM130311 · NIGMS · NEW YORK UNIVERSITY · PI Sevinc Ercan · 2019 to 2026
$3.3M
Mechanisms of X chromosome dosage compensation in C. elegansR01GM107293 · NIGMS · NEW YORK UNIVERSITY · PI ERCAN, SEVINC · 2014 to 2018
$1.5M
NICHD NIH HHS T32 HD007520NIGMS NIH HHS R01 GM107293NIGMS NIH HHS R35 GM130311NIH HHS T32HD007520
6 · The paper itself

Abstract

Condensin is a multi-subunit structural maintenance of chromosomes (SMC) complex that binds to and compacts chromosomes. Here, we addressed the regulation of condensin binding dynamics using Caenorhabditis elegans condensin DC, which represses X chromosomes in hermaphrodites for dosage compensation. We established fluorescence recovery after photobleaching (FRAP) using the SMC4 homolog DPY-27 and showed that a well-characterized ATPase mutation abolishes DPY-27 binding to X chromosomes. Next, we performed FRAP in the background of several chromatin modifier mutants that cause varying degrees of X chromosome derepression. The greatest effect was in a null mutant of the H4K20me2 demethylase DPY-21, where the mobile fraction of condensin DC reduced from ∼30% to 10%. In contrast, a catalytic mutant of dpy-21 did not regulate condensin DC mobility. Hi-C sequencing data from the dpy-21 null mutant showed little change compared to wild-type data, uncoupling Hi-C-measured long-range DNA contacts from transcriptional repression of the X chromosomes. Taken together, our results indicate that DPY-21 has a non-catalytic role in regulating the dynamics of condensin DC binding, which is important for transcription repression.

Indexed as

Caenorhabditis elegans ProteinsAdenosine TriphosphatasesAnimalsCaenorhabditis elegansDNA-Binding ProteinsHistone DemethylasesHistonesLysineMultiprotein ComplexesX ChromosomeAdenosine TriphosphatasesCaenorhabditis elegans Proteinscondensin complexesDNA-Binding ProteinsHistone DemethylasesHistonesLysineMultiprotein ComplexesC. elegansCondensinFRAPHi-CHistone modificationsTranscription

Identifiers

PMID34918745
PMCPMC8917352
OpenAlexW4210677174

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.