Evidence map›Paper›PMID 34918287›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Mass Cytometry for the Characterization of Individual Cell Types in Ovarian Solid Tumors.

Veronica D Gonzalez, Ying-Wen Huang, Wendy J Fantl

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Veronica D GonzalezBaxter Laboratory for Stem Cell Biology, Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Ying-Wen HuangDepartment of Urology, Stanford University School of Medicine, Stanford, CA, USA.
Wendy J FantlDepartment of Urology, Department of Obstetrics and Gynecology, Stanford Comprehensive Cancer Institute, Stanford, CA, USA. wjfantl@stanford.edu.
10X Genomics (United States) · USStanford University · US

Funding

The Cellular Response to Elafin in PAHP01HL108797 · NHLBI · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 2011 to 2021
$19.7M
Role of the microenvironment in ovarian cancer metastasisR01CA234553 · NCI · WASHINGTON UNIVERSITY · PI FUH, KATHERINE CYNTHIA · 2019 to 2023
$2.1M
(PQ8) Biomarker identification by mass cytometry in peripheral blood of patients with renal cell carcinoma undergoing immune checkpoint therapyR21CA231280 · NCI · STANFORD UNIVERSITY · PI FANTL, WENDY JANE, LEPPERT, JOHN THOMAS · 2019 to 2020
$377k
NCI NIH HHS R01 CA234553NCI NIH HHS R21 CA231280NHLBI NIH HHS P01 HL108797
6 · The paper itself

Abstract

Mass cytometry aka Cytometry by Time-Of-Flight (CyTOF) is one of several recently developed multiparametric single-cell technologies designed to address cellular heterogeneity within healthy and diseased tissue. Mass cytometry is an adaptation of flow cytometry in which antibodies are labeled with stable heavy metal isotopes and the readout is by time-of-flight mass spectrometry. With minimal spillover between channels, mass cytometry enables readouts of up to 60 parameters per single cell. Critically, mass cytometry can identify minority cell populations that are lost in bulk tissue analysis. Mass cytometry has been used to great effect for the study of immune cells. We have extended its use to examine single cells within disaggregated solid tissues, specifically freshly resected tubo-ovarian high-grade serous tumors. Here we detail our protocols designed to ensure the production of high-quality single-cell datasets. The methodology can be modified to accommodate the study of other solid tissues.

Indexed as

Ovarian NeoplasmsAntibodiesFemaleFlow CytometryHumansIsotopesMass SpectrometrySingle-Cell AnalysisAntibodiesIsotopesAntibody conjugationCisplatinCyTOFHeavy metal isotopeHigh-grade serous ovarian cancerLanthanidesLive–dead stainMass cytometryMaxpar labeling kitsPalladium barcodingRhodiumSingle-cell dissociationSolid tumors

Identifiers

PMID34918287
PMCPMC10509819
OpenAlexW4200474388

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.