Evidence map›Paper›PMID 34918030›Full record

ArticleBrain : a journal of neurology2022

Shared brain transcriptomic signature in TDP-43 type A FTLD patients with or without GRN mutations.

Cyril Pottier, Ligia Mateiu, Matthew C Baker, Mariely DeJesus-Hernandez, Cristina Teixeira Vicente, NiCole A Finch, Shulan Tian, Marka van Blitterswijk, Melissa E Murray, Yingxue Ren and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in Brain : a journal of neurology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Digital seed amplification assay for TDP-43 aggregate quantification in CSF.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article
  4. Review
  5. Digital seed amplification assay for TDP-43 aggregate quantification in CSF.medRxiv : the preprint server for health sciences · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 2 countries.

Cyril PottierVIB Center for Molecular Neurology, VIB, Antwerp, Belgium.ORCID 0000-0002-3049-9346
Ligia MateiuVIB Center for Molecular Neurology, VIB, Antwerp, Belgium.
Matthew C BakerDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Mariely DeJesus-HernandezDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Cristina Teixeira VicenteVIB Center for Molecular Neurology, VIB, Antwerp, Belgium.
NiCole A FinchDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Shulan TianDepartment of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, USA.
Marka van BlitterswijkDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.ORCID 0000-0002-3054-7053
Melissa E MurrayDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Yingxue RenDepartment of Quantitative Health Sciences, Mayo Clinic, Jacksonville, FL, USA.
Leonard PetrucelliDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.
Björn OskarssonDepartment of Neurology, Mayo Clinic, Jacksonville, FL, USA.ORCID 0000-0002-1725-9866
Joanna M BiernackaDepartment of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, USA.
Neill R Graff-RadfordDepartment of Neurology, Mayo Clinic, Jacksonville, FL, USA.
Bradley F BoeveDepartment of Neurology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0002-4153-8187
Ronald C PetersenDepartment of Neurology, Mayo Clinic, Rochester, MN, USA.
Keith A JosephsDepartment of Neurology, Mayo Clinic, Rochester, MN, USA.ORCID 0000-0003-2930-8634
Yan W AsmannDepartment of Quantitative Health Sciences, Mayo Clinic, Jacksonville, FL, USA.
Dennis W DicksonDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, USA.ORCID 0000-0001-7189-7917
Rosa RademakersVIB Center for Molecular Neurology, VIB, Antwerp, Belgium.
Mayo Clinic in Florida · USMayo Clinic in Arizona · USUniversity of Antwerp · BEWinnMed · USVIB-UAntwerp Center for Molecular Neurology · BE

Funding

Technology and Remote Assessment CoreU19AG063911 · NIA · MAYO CLINIC ROCHESTER · PI Bradley F Boeve · 2019 to 2026
$120.9M
THE PGRN/TDP-43 AXIS IN ALZHEIMER?S DISEASE AND NEURODEGENERATIONP50AG016574 · NIA · MAYO CLINIC ROCHESTER · PI PETERSEN, RONALD C · 1999 to 2018
$36.9M
Research Education ComponentP30AG062677 · NIA · MAYO CLINIC ROCHESTER · PI NILUFER ERTEKIN-TANER · 2019 to 2026
$33.5M
Longitudinal Evaluation of Familial Frontotemporal Dementia Subjects (LEFFTDS)U01AG045390 · NIA · MAYO CLINIC ROCHESTER · PI BOEVE, BRADLEY F, ROSEN, HOWARD J · 2014 to 2018
$16.9M
Training - The Frontotemporal Lobar Degeneration Clinical Research ConsortiumU54NS092089 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BOXER, ADAM L. · 2014 to 2018
$6.4M
Whole genome sequencing consortium on Frontotemporal dementia with underlying TDP-43 pathologyUH3NS103870 · NINDS · MAYO CLINIC JACKSONVILLE · PI RADEMAKERS, ROSA · 2019 to 2021
$3.7M
Genetic Discovery and Pathobiology of Frontotemporal Lobar Degeneration and Related TDP-43 ProteinopathiesR35NS097261 · NINDS · MAYO CLINIC JACKSONVILLE · PI RADEMAKERS, ROSA · 2017 to 2019
$2.9M
Whole genome sequencing consortium on Frontotemporal dementia with underlying TDP-43 pathologyUG3NS103870 · NINDS · MAYO CLINIC JACKSONVILLE · PI RADEMAKERS, ROSA · 2017 to 2018
$1.9M
NIA NIH HHS P30 AG062677NIA NIH HHS P50 AG016574NIA NIH HHS U01 AG045390NIA NIH HHS U19 AG063911NINDS NIH HHS R35 NS097261NINDS NIH HHS U54 NS092089NINDS NIH HHS UG3 NS103870NINDS NIH HHS UH3 NS103870
6 · The paper itself

Abstract

Frontotemporal lobar degeneration with TDP-43 inclusions (FTLD-TDP) is a complex heterogeneous neurodegenerative disorder for which mechanisms are poorly understood. To explore transcriptional changes underlying FTLD-TDP, we performed RNA-sequencing on 66 genetically unexplained FTLD-TDP patients, 24 FTLD-TDP patients with GRN mutations and 24 control participants. Using principal component analysis, hierarchical clustering, differential expression and coexpression network analyses, we showed that GRN mutation carriers and FTLD-TDP-A patients without a known mutation shared a common transcriptional signature that is independent of GRN loss-of-function. After combining both groups, differential expression as compared to the control group and coexpression analyses revealed alteration of processes related to immune response, synaptic transmission, RNA metabolism, angiogenesis and vesicle-mediated transport. Deconvolution of the data highlighted strong cellular alterations that were similar in FTLD-TDP-A and GRN mutation carriers with NSF as a potentially important player in both groups. We propose several potentially druggable pathways such as the GABAergic, GDNF and sphingolipid pathways. Our findings underline new disease mechanisms and strongly suggest that affected pathways in GRN mutation carriers extend beyond GRN and contribute to genetically unexplained forms of FTLD-TDP-A.

Indexed as

Frontotemporal DementiaFrontotemporal Lobar DegenerationProgranulinsBrainDNA-Binding ProteinsHumansIntercellular Signaling Peptides and ProteinsMutationTranscriptomeDNA-Binding ProteinsGRN protein, humanIntercellular Signaling Peptides and ProteinsProgranulinsdeconvolutionfrontotemporal lobar degenerationGABAGRN mutationtranscriptome

Identifiers

PMID34918030
PMCPMC9337811
OpenAlexW4200444195

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.