Evidence map›Paper›PMID 34916498›Full record

ArticleNature communications2021

Induction of Rosette-to-Lumen stage embryoids using reprogramming paradigms in ESCs.

Jan Langkabel, Arik Horne, Lorenzo Bonaguro, Lisa Holsten, Tatiana Hesse, Alexej Knaus, Yannick Riedel, Matthias Becker, Kristian Händler, Tarek Elmzzahi and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
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  14. In Vitro Embryogenesis and Gastrulation Using Stem Cells in Mice and Humans.International journal of molecular sciences · 2023
    Review
  15. Journey of the mouse primitive endoderm: from specification to maturation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 2 institutions in 3 countries.

Jan Langkabel *Institute of Pathology, Department of Developmental Pathology, University Hospital Bonn, University of Bonn, Bonn, Germany.
Arik Horne *Genomics and Immunoregulation, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Lorenzo BonaguroGenomics and Immunoregulation, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.ORCID http://orcid.org/0000-0001-9675-7208
Lisa HolstenGenomics and Immunoregulation, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.ORCID http://orcid.org/0000-0001-6238-1273
Tatiana HesseInstitute of Pathology, Department of Developmental Pathology, University Hospital Bonn, University of Bonn, Bonn, Germany.
Alexej KnausInstitute of Pathology, Department of Developmental Pathology, University Hospital Bonn, University of Bonn, Bonn, Germany.
Yannick RiedelInstitute of Pathology, Department of Developmental Pathology, University Hospital Bonn, University of Bonn, Bonn, Germany.
Matthias BeckerSystems Medicine, DZNE, Bonn, Germany and University of Bonn, Bonn, Germany.ORCID http://orcid.org/0000-0002-7120-4508
Kristian HändlerGenomics and Immunoregulation, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Tarek ElmzzahiMolecular Immunology in Neurodegeneration, DZNE, Bonn, Germany.
Kevin BasslerGenomics and Immunoregulation, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Nico ReuschGenomics and Immunoregulation, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.ORCID http://orcid.org/0000-0001-5625-0701
Leon Harootoonovtch YeghiazarianGenomics and Immunoregulation, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Tal PechtGenomics and Immunoregulation, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Adem SaglamSystems Medicine, DZNE, Bonn, Germany and University of Bonn, Bonn, Germany.
Thomas UlasGenomics and Immunoregulation, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Anna C AschenbrennerGenomics and Immunoregulation, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Franziska KaiserInstitute of Pathology, Department of Developmental Pathology, University Hospital Bonn, University of Bonn, Bonn, Germany.
Caroline KubaczkaInstitute of Pathology, Department of Developmental Pathology, University Hospital Bonn, University of Bonn, Bonn, Germany.ORCID http://orcid.org/0000-0002-7783-6602
Joachim L SchultzeGenomics and Immunoregulation, Life and Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Hubert SchorleInstitute of Pathology, Department of Developmental Pathology, University Hospital Bonn, University of Bonn, Bonn, Germany. schorle@uni-bonn.de.ORCID http://orcid.org/0000-0001-8272-0076
University of Bonn · DEThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Blastocyst-derived stem cell lines were shown to self-organize into embryo-like structures in 3D cell culture environments. Here, we provide evidence that embryo-like structures can be generated solely based on transcription factor-mediated reprogramming of embryonic stem cells in a simple 3D co-culture system. Embryonic stem cells in these cultures self-organize into elongated, compartmentalized embryo-like structures reflecting aspects of the inner regions of the early post-implantation embryo. Single-cell RNA-sequencing reveals transcriptional profiles resembling epiblast, primitive-/visceral endoderm, and extraembryonic ectoderm of early murine embryos around E4.5-E5.5. In this stem cell-based embryo model, progression from rosette formation to lumenogenesis accompanied by progression from naïve- to primed pluripotency was observed within Epi-like cells. Additionally, lineage specification of primordial germ cells and distal/anterior visceral endoderm-like cells was observed in epiblast- or visceral endoderm-like compartments, respectively. The system presented in this study allows for fast and reproducible generation of embryo-like structures, providing an additional tool to study aspects of early embryogenesis.

Indexed as

Embryonic DevelopmentAnimalsBlastocystCell Culture Techniques, Three DimensionalCellular ReprogrammingEmbryoid BodiesEmbryo, MammalianEmbryonic Stem CellsEndodermGene Expression Regulation, DevelopmentalMiceRNA-Seq

Identifiers

PMID34916498
PMCPMC8677818
OpenAlexW4200091832

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.