Evidence map›Paper›PMID 34914803›Full record

ArticlePloS one2021

Performance of GenoType MTBDRsl assay for detection of second-line drugs and ethambutol resistance directly from sputum specimens of MDR-TB patients in Bangladesh.

S M Mazidur Rahman, Rumana Nasrin, Arfatur Rahman, Shahriar Ahmed, Razia Khatun, Mohammad Khaja Mafij Uddin, Md Mojibur Rahman, Sayera Banu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

S M Mazidur RahmanInfectious Diseases Division, icddr,b, Dhaka, Bangladesh.
Rumana NasrinInfectious Diseases Division, icddr,b, Dhaka, Bangladesh.
Arfatur RahmanInfectious Diseases Division, icddr,b, Dhaka, Bangladesh.ORCID 0000-0001-8749-0337
Shahriar AhmedInfectious Diseases Division, icddr,b, Dhaka, Bangladesh.
Razia KhatunInfectious Diseases Division, icddr,b, Dhaka, Bangladesh.
Mohammad Khaja Mafij UddinInfectious Diseases Division, icddr,b, Dhaka, Bangladesh.
Md Mojibur RahmanDepartment of Epidemiology, Bangladesh University of Health Sciences, Darus Salam, Mirpur, Dhaka, Bangladesh.
Sayera BanuInfectious Diseases Division, icddr,b, Dhaka, Bangladesh.ORCID 0000-0002-5121-1962
International Centre for Diarrhoeal Disease Research · BDBangladesh University · BD

Funding

NCPDCID CDC HHS U01 CI000628
6 · The paper itself

Abstract

backgroundRapid and early detection of drug susceptibility among multidrug-resistant tuberculosis (MDR-TB) patients could guide the timely initiation of effective treatment and reduce transmission of drug-resistant TB. In the current study, we evaluated the diagnostic performance of GenoType MTBDRsl (MTBDRsl) ver1.0 assay for detection of resistance to ofloxacin (OFL), kanamycin (KAN) and ethambutol (EMB), and additionally the XDR-TB among MDR-TB patients in Bangladesh.

methodsThe MTBDRsl assay was performed directly on 218 smear-positive sputum specimens collected from MDR-TB patients and the results were compared with the phenotypic drug susceptibility testing (DST) performed on solid Lowenstein-Jensen (L-J) media. We also analyzed the mutation patterns of gyrA, rrs, and embB genes for detection of resistance to OFL, KAN and EMB, respectively.

resultsThe sensitivity and specificity of the MTBDRsl compared to phenotypic L-J DST were 81.8% (95% CI, 69.1-90.9) and 98.8% (95% CI, 95.6-99.8), respectively for OFL (PPV: 95.7% & NPV: 94.1%); 65.1% (95% CI, 57.5-72.2) and 86.7% (95% CI, 73.2-94.9), respectively for EMB (PPV: 94.9% & NPV: 39.4%); and 100% for KAN. The diagnostic accuracy of KAN, OFL and EMB were 100, 94.5 and 69.6%, respectively. Moreover, the sensitivity, specificity and diagnostic accuracy of MtBDRsl for detection of XDR-TB was 100%. The most frequently observed mutations were at codon D94G (46.8%) of gyrA gene, A1401G (83.3%) of rrs gene, and M306V (41.5%) of the embB gene.

conclusionConsidering the excellent performance in this study we suggest that MTBDRsl assay can be used as an initial rapid test for detection of KAN and OFL susceptibility, as well as XDR-TB directly from smear-positive sputum specimens of MDR-TB patients in Bangladesh.

Indexed as

AdultAgedAged, 80 and overAntitubercular AgentsBangladeshDNA, BacterialEthambutolExtensively Drug-Resistant TuberculosisFemaleGenotypeGenotyping TechniquesHumansKanamycinMaleMicrobial Sensitivity TestsMiddle AgedAntitubercular AgentsDNA, BacterialEthambutolKanamycinOfloxacin

Identifiers

PMID34914803
PMCPMC8675706
OpenAlexW4200268716

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.