Evidence map›Paper›PMID 34914197›Full record

ArticleThe FEBS journal2022

Double stranded DNA breaks and genome editing trigger loss of ribosomal protein RPS27A.

Celeste Riepe, Elena Zelin, Phillip A Frankino, Zuriah A Meacham, Samantha G Fernandez, Nicholas T Ingolia, Jacob E Corn

Open access · hybridAbstract read
In one paragraph

Article in The FEBS journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Celeste RiepeDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID 0000-0001-8672-5392
Elena ZelinInnovative Genomics Institute, University of California, Berkeley, CA, USA.
Phillip A FrankinoDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Zuriah A MeachamDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Samantha G FernandezDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Nicholas T IngoliaDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Jacob E CornDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
University of California, Berkeley · USInnovative Genomics Institute · US

Funding

THE MOLECULAR BASIS OF CELL FUNCTIONT32GM007232 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BILDER, DAVID, UNAL, ELCIN · 1985 to 2022
$36.4M
Discovering mechanisms that regulate organelle autophagyDP2HL141006 · NHLBI · UNIVERSITY OF CALIFORNIA BERKELEY · PI CORN, JACOB ELLERY · 2017 to 2017
$2.4M
Molecular Basis and Cellular Roles of Translational RegulationDP2CA195768 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI INGOLIA, NICHOLAS T · 2014 to 2014
$2.4M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
NCI NIH HHS DP2 CA195768NHLBI NIH HHS DP2 HL141006NIGMS NIH HHS T32 GM007232NIH HHS S10 OD018174
6 · The paper itself

Abstract

DNA damage activates a robust transcriptional stress response, but much less is known about how DNA damage impacts translation. The advent of genome editing with Cas9 has intensified interest in understanding cellular responses to DNA damage. Here, we find that DNA double-strand breaks (DSBs), including those induced by Cas9, trigger the loss of ribosomal protein RPS27A from ribosomes via p53-independent proteasomal degradation. Comparisons of Cas9 and dCas9 ribosome profiling and mRNA-seq experiments reveal a global translational response to DSBs that precedes changes in transcript abundance. Our results demonstrate that even a single DSB can lead to altered translational output and ribosome remodeling, suggesting caution in interpreting cellular phenotypes measured immediately after genome editing.

Indexed as

DNA Breaks, Double-StrandedGene EditingCRISPR-Cas SystemsDNA DamageDNA RepairRibosomal ProteinsRibosomal ProteinsDNA damage responsegenome editingribosomestranslation

Identifiers

PMID34914197
PMCPMC9295824
OpenAlexW4200510899

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.