Evidence map›Paper›PMID 34914162›Full record

ArticleEMBO reports2022

A virus-derived microRNA targets immune response genes during SARS-CoV-2 infection.

Meetali Singh, Maxime Chazal, Piergiuseppe Quarato, Loan Bourdon, Christophe Malabat, Thomas Vallet, Marco Vignuzzi, Sylvie van der Werf, Sylvie Behillil, Flora Donati and 5 more

Open access · hybridAbstract read
In one paragraph

Article in EMBO reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. Pooled it
  2. Review
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  14. Article
  15. MicroRNA750-3p TargetsViruses · 2024
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Viral miRNA regulation of host gene expression.Seminars in cell & developmental biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Meetali Singh *Department of Developmental and Stem Cell Biology, Institut Pasteur, CNRS UMR3738, Mechanisms of Epigenetic Inheritance, Université de Paris, Paris, France.ORCID 0000-0002-5783-073X
Maxime Chazal *Virus Sensing and Signaling Unit, Institut Pasteur, CNRS UMR3569, Université de Paris, Paris, France.ORCID 0000-0002-3144-5032
Piergiuseppe QuaratoDepartment of Developmental and Stem Cell Biology, Institut Pasteur, CNRS UMR3738, Mechanisms of Epigenetic Inheritance, Université de Paris, Paris, France.ORCID 0000-0003-3839-3383
Loan BourdonDepartment of Developmental and Stem Cell Biology, Institut Pasteur, CNRS UMR3738, Mechanisms of Epigenetic Inheritance, Université de Paris, Paris, France.
Christophe MalabatDepartment of Computational Biology, Institut Pasteur, Bioinformatics and Biostatistics Hub, Université de Paris, Paris, France.
Thomas ValletViral Populations and Pathogenesis Unit, Institut Pasteur, CNRS UMR 3569, Université de Paris, Paris, France.ORCID 0000-0001-7775-7448
Marco VignuzziViral Populations and Pathogenesis Unit, Institut Pasteur, CNRS UMR 3569, Université de Paris, Paris, France.
Sylvie van der WerfNational Reference Center for Respiratory Viruses, Molecular Genetics of RNA Viruses, Institut Pasteur, CNRS UMR 3569, Université de Paris, Paris, France.ORCID 0000-0002-1148-4456
Sylvie BehillilNational Reference Center for Respiratory Viruses, Molecular Genetics of RNA Viruses, Institut Pasteur, CNRS UMR 3569, Université de Paris, Paris, France.
Flora DonatiNational Reference Center for Respiratory Viruses, Molecular Genetics of RNA Viruses, Institut Pasteur, CNRS UMR 3569, Université de Paris, Paris, France.ORCID 0000-0003-2862-9751
Nathalie SauvonnetIntracellular Trafficking and Tissue Homeostasis, Institut Pasteur, Université de Paris, Paris, France.ORCID 0000-0003-0306-3376
Giulia NigroMicroenvironment and Immunity Unit, Institut Pasteur, INSERM U1224, Université de Paris, Paris, France.
Maryline BourgineVirology Department, Institut Pasteur, Institut Pasteur-TheraVectys Joint Lab, Université de Paris, Paris, France.ORCID 0000-0002-8850-8073
Nolwenn JouvenetVirus Sensing and Signaling Unit, Institut Pasteur, CNRS UMR3569, Université de Paris, Paris, France.ORCID 0000-0001-6103-6048
Germano CecereDepartment of Developmental and Stem Cell Biology, Institut Pasteur, CNRS UMR3738, Mechanisms of Epigenetic Inheritance, Université de Paris, Paris, France.ORCID 0000-0001-5912-3417
Centre National de la Recherche Scientifique · FRInstitut Pasteur · FRInserm · FR

Funding

France Génomique ANR-10-INBS-09-09Pasteur-Roux-Cantarini Postdoctoral Fellowship ProgramURGENCE COVID-19 Institut Pasteur Fundraising Campaign
6 · The paper itself

Abstract

SARS-CoV-2 infection results in impaired interferon response in patients with severe COVID-19. However, how SARS-CoV-2 interferes with host immune responses is incompletely understood. Here, we sequence small RNAs from SARS-CoV-2-infected human cells and identify a microRNA (miRNA) derived from a recently evolved region of the viral genome. We show that the virus-derived miRNA produces two miRNA isoforms in infected cells by the enzyme Dicer, which are loaded into Argonaute proteins. Moreover, the predominant miRNA isoform targets the 3'UTR of interferon-stimulated genes and represses their expression in a miRNA-like fashion. Finally, the two viral miRNA isoforms were detected in nasopharyngeal swabs from COVID-19 patients. We propose that SARS-CoV-2 can potentially employ a virus-derived miRNA to hijack the host miRNA machinery, which could help to evade the interferon-mediated immune response.

Indexed as

COVID-19MicroRNAs3' Untranslated RegionsHumansImmunityRNA, ViralSARS-CoV-23' Untranslated RegionsMicroRNAsRNA, ViralArgonauteCOVID-19interferon responsemiRNASARS-CoV-2

Identifiers

PMID34914162
PMCPMC8811647
OpenAlexW4200356903

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.