Evidence map›Paper›PMID 34913537›Full record

ArticleProtein science : a publication of the Protein Society2022

Rapid directed molecular evolution of fluorescent proteins in mammalian cells.

Siranush Babakhanova, Erica E Jung, Kazuhiko Namikawa, Hanbin Zhang, Yangdong Wang, Oksana M Subach, Dmitry A Korzhenevskiy, Tatiana V Rakitina, Xian Xiao, Wenjing Wang and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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  5. Identification of optimal fluorophores for use in theMolecular biology of the cell · 2026
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  16. Rapid directed molecular evolution of fluorescent proteins in mammalian cells.Protein science : a publication of the Protein Society · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 4 countries.

Siranush BabakhanovaMedia Arts and Sciences, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, USA.
Erica E JungDepartment of Mechanical and Industrial Engineering, The University of Illinois at Chicago, Chicago, Illinois, USA.
Kazuhiko NamikawaDivision of Cellular and Molecular Neurobiology, Zoological Institute, Technische Universität Braunschweig, Braunschweig, Germany.
Hanbin ZhangSchool of Life Sciences, Westlake University, Zhejiang, Hangzhou, China.
Yangdong WangSchool of Life Sciences, Westlake University, Zhejiang, Hangzhou, China.
Oksana M SubachNational Research Center "Kurchatov Institute", Moscow, Russian Federation.
Dmitry A KorzhenevskiyNational Research Center "Kurchatov Institute", Moscow, Russian Federation.
Tatiana V RakitinaNational Research Center "Kurchatov Institute", Moscow, Russian Federation.
Xian XiaoSchool of Life Sciences, Westlake University, Zhejiang, Hangzhou, China.
Wenjing WangSchool of Life Sciences, Westlake University, Zhejiang, Hangzhou, China.
Jing ShiSchool of Life Sciences, Westlake University, Zhejiang, Hangzhou, China.
Mikhail DrobizhevDepartment of Microbiology and Immunology, Montana State University, Bozeman, Montana, USA.
Demian ParkMedia Arts and Sciences, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, USA.
Lea EisenhardDivision of Cellular and Molecular Neurobiology, Zoological Institute, Technische Universität Braunschweig, Braunschweig, Germany.
Hongyun TangSchool of Life Sciences, Westlake University, Zhejiang, Hangzhou, China.
Reinhard W KösterDivision of Cellular and Molecular Neurobiology, Zoological Institute, Technische Universität Braunschweig, Braunschweig, Germany.
Fedor V SubachNational Research Center "Kurchatov Institute", Moscow, Russian Federation.ORCID 0000-0003-2720-7821
Edward S BoydenMedia Arts and Sciences, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, USA.
Kiryl D PiatkevichSchool of Life Sciences, Westlake University, Zhejiang, Hangzhou, China.ORCID 0000-0002-7777-9468
Westlake University · CNKurchatov Institute · RUTechnische Universität Braunschweig · DEMcGovern Institute for Brain Research · USHoward Hughes Medical Institute · USMontana State University · USUniversity of Illinois Chicago · US

Funding

Novel Platforms for Systematic Optical Control of Complex Neural Circuits In VivoR01DA029639 · NIDA · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S. · 2010 to 2023
$6.7M
Redesigning General Anesthesia (Admin Supp)R01GM104948 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S., BROWN, EMERY N · 2012 to 2016
$4.4M
High-Performance Imaging Through Scattering Living TissueR01DA045549 · NIDA · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S. · 2017 to 2020
$3.5M
Multidimensional Optimization of Voltage Indicators for In Vivo Neural Activity ImagingR01MH122971 · NIMH · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI HAN, XUE · 2020 to 2024
$3.4M
RNA Scaffolds for Cell Specific Multiplexed Neural ObservationR01MH114031 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S. · 2017 to 2020
$2.8M
Resource for Multiphoton Characterization of Genetically-Encoded ProbesU24NS109107 · NINDS · MONTANA STATE UNIVERSITY - BOZEMAN · PI Mikhail Drobizhev · 2018 to 2026
$2.2M
High Speed, Multi-sensor Light Field Deconvolution Microscopy for Whole Brain Recording of Neuronal ActivityR43MH109332 · NIMH · LEAFLABS, LLC · PI BOYDEN, EDWARD S., SHERWOOD, JOHN L · 2016 to 2017
$892k
NIDA NIH HHS R01 DA029639NIDA NIH HHS R01 DA045549NIGMS NIH HHS R01 GM104948NIMH NIH HHS R01 MH114031NIMH NIH HHS R01 MH122971NIMH NIH HHS R43 MH109332NINDS NIH HHS U24 NS109107
6 · The paper itself

Abstract

In vivo imaging of model organisms is heavily reliant on fluorescent proteins with high intracellular brightness. Here we describe a practical method for rapid optimization of fluorescent proteins via directed molecular evolution in cultured mammalian cells. Using this method, we were able to perform screening of large gene libraries containing up to 2 × 10

Indexed as

Directed Molecular EvolutionZebrafishAnimalsCell LineFluorescent DyesGreen Fluorescent ProteinsLuminescent ProteinsMammalsMiceNeuronsOptical ImagingFluorescent DyesGreen Fluorescent ProteinsLuminescent Proteinsdirected molecular evolutionfluorescent proteinsin vivo fluorescence imagingneuroimagingoptogenetics

Identifiers

PMID34913537
PMCPMC8862398
OpenAlexW4220853974

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.