Evidence map›Paper›PMID 34913024›Full record

ArticleNanoscale advances2021

Stain-free identification of tissue pathology using a generative adversarial network to infer nanomechanical signatures.

Lydia Neary-Zajiczek, Clara Essmann, Anita Rau, Sophia Bano, Neil Clancy, Marnix Jansen, Lauren Heptinstall, Elena Miranda, Amir Gander, Vijay Pawar and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nanoscale advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. The Challenges and Opportunities of Translational Pathology.Journal of clinical and translational pathology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Lydia Neary-ZajiczekWellcome/EPSRC Centre for Surgical and Interventional Sciences London W1W 7TS UK lydia.zajiczek.17@ucl.ac.uk.ORCID https://orcid.org/0000-0002-0002-1480
Clara EssmannDepartment of Computer Science, University College London London WC1E 6BT UK.ORCID https://orcid.org/0000-0001-5468-9489
Anita RauWellcome/EPSRC Centre for Surgical and Interventional Sciences London W1W 7TS UK lydia.zajiczek.17@ucl.ac.uk.ORCID https://orcid.org/0000-0002-4759-2846
Sophia BanoWellcome/EPSRC Centre for Surgical and Interventional Sciences London W1W 7TS UK lydia.zajiczek.17@ucl.ac.uk.ORCID https://orcid.org/0000-0003-1329-4565
Neil ClancyWellcome/EPSRC Centre for Surgical and Interventional Sciences London W1W 7TS UK lydia.zajiczek.17@ucl.ac.uk.ORCID https://orcid.org/0000-0002-7240-5790
Marnix JansenDepartment of Pathology, UCL Cancer Institute, University College London London WC1E 6BT UK.ORCID https://orcid.org/0000-0003-0645-564X
Lauren HeptinstallDepartment of Cellular Pathology, Royal Free Hospital London NW3 2QG UK.
Elena MirandaBiobank and Pathology Translational Technology Platform, UCL Cancer Institute, University College London London WC1E 6BT UK.ORCID https://orcid.org/0000-0002-4166-5979
Amir GanderDepartment of Surgical Biotechnology, University College London London WC1E 6BT UK.ORCID https://orcid.org/0000-0001-8984-5525
Vijay PawarDepartment of Computer Science, University College London London WC1E 6BT UK.ORCID https://orcid.org/0000-0003-1963-5201
Delmiro Fernandez-ReyesDepartment of Computer Science, University College London London WC1E 6BT UK.ORCID https://orcid.org/0000-0001-5070-9198
Michael ShawWellcome/EPSRC Centre for Surgical and Interventional Sciences London W1W 7TS UK lydia.zajiczek.17@ucl.ac.uk.ORCID https://orcid.org/0000-0001-6099-3217
Brian DavidsonWellcome/EPSRC Centre for Surgical and Interventional Sciences London W1W 7TS UK lydia.zajiczek.17@ucl.ac.uk.ORCID https://orcid.org/0000-0002-9152-5907
Danail StoyanovWellcome/EPSRC Centre for Surgical and Interventional Sciences London W1W 7TS UK lydia.zajiczek.17@ucl.ac.uk.ORCID https://orcid.org/0000-0002-0980-3227
Wellcome / EPSRC Centre for Interventional and Surgical Sciences · GBNational Physical Laboratory · GBThe Royal Free Hospital · GBUniversity College London · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

Intraoperative frozen section analysis can be used to improve the accuracy of tumour margin estimation during cancer resection surgery through rapid processing and pathological assessment of excised tissue. Its applicability is limited in some cases due to the additional risks associated with prolonged surgery, largely from the time-consuming staining procedure. Our work uses a measurable property of bulk tissue to bypass the staining process: as tumour cells proliferate, they influence the surrounding extra-cellular matrix, and the resulting change in elastic modulus provides a signature of the underlying pathology. In this work we accurately localise atomic force microscopy measurements of human liver tissue samples and train a generative adversarial network to infer elastic modulus from low-resolution images of unstained tissue sections. Pathology is predicted through unsupervised clustering of parameters characterizing the distributions of inferred values, achieving 89% accuracy for all samples based on the nominal assessment (

Identifiers

PMID34913024
PMCPMC8577366
OpenAlexW3197693212

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.