Evidence map›Paper›PMID 34912340›Full record

ArticleFrontiers in immunology2021

Single-Cell and Bulk RNA-Sequencing Reveal Differences in Monocyte Susceptibility to Influenza A Virus Infection Between Africans and Europeans.

Mary B O'Neill, Hélène Quach, Julien Pothlichet, Yann Aquino, Aurélie Bisiaux, Nora Zidane, Matthieu Deschamps, Valentina Libri, Milena Hasan, Shen-Ying Zhang and 8 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Multivariate Host-Pathogen Interactions Driving Heterogeneous Viral Shedding and CD8medRxiv : the preprint server for health sciences · 2025
    Article
  3. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Methods and Insights from Single-Cell Expression Quantitative Trait Loci.Annual review of genomics and human genetics · 2023
    Review
  10. Article
  11. High-throughput droplet-based analysis of influenza A virus genetic reassortment by single-virus RNA sequencing.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Article
  13. Article
  14. Journal of virology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Mary B O'NeillHuman Evolutionary Genetics Unit, Institut Pasteur, UMR 2000, Centre National de la Recherche Scientifique (CNRS), Paris, France.
Hélène QuachMuséum National d'Histoire Naturelle, UMR7206, Centre National de la Recherche Scientifique (CNRS), Université de Paris, Paris, France.
Julien PothlichetDIACCURATE, Paris, France.
Yann AquinoHuman Evolutionary Genetics Unit, Institut Pasteur, UMR 2000, Centre National de la Recherche Scientifique (CNRS), Paris, France.
Aurélie BisiauxHuman Evolutionary Genetics Unit, Institut Pasteur, UMR 2000, Centre National de la Recherche Scientifique (CNRS), Paris, France.
Nora ZidaneBiodiversity and Epidemiology of Bacterial Pathogens Unit, Institut Pasteur, Paris, France.
Matthieu DeschampsHuman Evolutionary Genetics Unit, Institut Pasteur, UMR 2000, Centre National de la Recherche Scientifique (CNRS), Paris, France.
Valentina LibriCytometry and Biomarkers UTechS, Institut Pasteur, Paris, France.
Milena HasanCytometry and Biomarkers UTechS, Institut Pasteur, Paris, France.
Shen-Ying ZhangSt. Giles Laboratory of Human Genetics of Infectious Diseases, The Rockefeller University, New York, NY, United States.
Qian ZhangSt. Giles Laboratory of Human Genetics of Infectious Diseases, The Rockefeller University, New York, NY, United States.
Daniela MatuozzoLaboratory of Human Genetics of Infectious Diseases, Necker Hospital for Sick Children, INSERM UMR 1163, Necker Hospital for Sick Children, Paris, France.
Aurélie CobatLaboratory of Human Genetics of Infectious Diseases, Necker Hospital for Sick Children, INSERM UMR 1163, Necker Hospital for Sick Children, Paris, France.
Laurent AbelSt. Giles Laboratory of Human Genetics of Infectious Diseases, The Rockefeller University, New York, NY, United States.
Jean-Laurent CasanovaSt. Giles Laboratory of Human Genetics of Infectious Diseases, The Rockefeller University, New York, NY, United States.
Nadia NaffakhRNA Biology of Influenza Virus Unit, Institut Pasteur, Paris, France.
Maxime RotivalHuman Evolutionary Genetics Unit, Institut Pasteur, UMR 2000, Centre National de la Recherche Scientifique (CNRS), Paris, France.
Lluis Quintana-MurciHuman Evolutionary Genetics Unit, Institut Pasteur, UMR 2000, Centre National de la Recherche Scientifique (CNRS), Paris, France.
Institut Pasteur · FRCentre National de la Recherche Scientifique · FRInserm · FRInstitut des Maladies Génétiques Imagine · FRRockefeller University · USSorbonne Université · FRUniversité Paris Cité · FR

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

There is considerable inter-individual and inter-population variability in response to viruses. The potential of monocytes to elicit type-I interferon responses has attracted attention to their role in viral infections. Here, we use single-cell RNA-sequencing to characterize the role of cellular heterogeneity in human variation of monocyte responses to influenza A virus (IAV) exposure. We show widespread inter-individual variability in the percentage of IAV-infected monocytes. Notably, individuals with high cellular susceptibility to IAV are characterized by a lower activation at basal state of an IRF/STAT-induced transcriptional network, which includes antiviral genes such as

Indexed as

Influenza A virusSequence Analysis, RNASingle-Cell AnalysisAdultBlack PeopleCytokinesGPI-Linked ProteinsHumansInfluenza, HumanMiddle AgedMonocytesReceptors, IgGRibosomesWhite PeopleYoung AdultCytokinesFCGR3A protein, humanFCGR3B protein, humanGPI-Linked ProteinsReceptors, IgGancestryinfluenza virusMonocytespopulationsingle-cell ‘omicstranscriptomics

Identifiers

PMID34912340
PMCPMC8667309
OpenAlexW3217674951

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.