Evidence map›Paper›PMID 34912117›Full record

ArticleNature2022

Synthon-based ligand discovery in virtual libraries of over 11 billion compounds.

Arman A Sadybekov, Anastasiia V Sadybekov, Yongfeng Liu, Christos Iliopoulos-Tsoutsouvas, Xi-Ping Huang, Julie Pickett, Blake Houser, Nilkanth Patel, Ngan K Tran, Fei Tong and 10 more

Abstract read
In one paragraph

Article in Nature, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 213 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
213citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

213 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Robots and Minimal, Physics-Informed Features: A Hybrid Framework for Enzyme Catalysis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Circumventing the Synthesizability Problem in Generative Molecular Design.Journal of chemical information and modeling · 2026
    Article
  11. Article
  12. Library Docking for Cannabinoid-2 Receptor Ligands.Journal of medicinal chemistry · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

153 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Arman A Sadybekov *Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-0573-4738
Anastasiia V Sadybekov *Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0003-3925-983X
Yongfeng Liu *Department of Pharmacology, School of Medicine, University of North Carolina, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-8649-7892
Christos Iliopoulos-Tsoutsouvas *Center for Drug Discovery, Department of Pharmaceutical Sciences, Northeastern University, Boston, MA, USA.
Xi-Ping HuangDepartment of Pharmacology, School of Medicine, University of North Carolina, Chapel Hill, NC, USA.
Julie PickettDepartment of Pharmacology, School of Medicine, University of North Carolina, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-9535-8528
Blake HouserDepartment of Chemistry, Bridge Institute, USC Michelson Center for Convergent Biosciences, University of Southern California, Los Angeles, CA, USA.
Nilkanth PatelDepartment of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.
Ngan K TranCenter for Drug Discovery, Department of Pharmaceutical Sciences, Northeastern University, Boston, MA, USA.
Fei TongCenter for Drug Discovery, Department of Pharmaceutical Sciences, Northeastern University, Boston, MA, USA.
Nikolai ZvonokCenter for Drug Discovery, Department of Pharmaceutical Sciences, Northeastern University, Boston, MA, USA.
Manish K JainDepartment of Pharmacology, School of Medicine, University of North Carolina, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0001-8173-3326
Olena SavychEnamine Ltd, Kyiv, Ukraine.
Dmytro S RadchenkoEnamine Ltd, Kyiv, Ukraine.ORCID http://orcid.org/0000-0001-5444-7754
Spyros P NikasCenter for Drug Discovery, Department of Pharmaceutical Sciences, Northeastern University, Boston, MA, USA.
Nicos A PetasisDepartment of Chemistry, Bridge Institute, USC Michelson Center for Convergent Biosciences, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-8864-4446
Yurii S MorozTaras Shevchenko National University of Kyiv, Kyiv, Ukraine.ORCID http://orcid.org/0000-0001-6073-002X
Bryan L RothDepartment of Pharmacology, School of Medicine, University of North Carolina, Chapel Hill, NC, USA. bryan_roth@med.unc.edu.ORCID http://orcid.org/0000-0002-0561-6520
Alexandros MakriyannisCenter for Drug Discovery, Department of Pharmaceutical Sciences, Northeastern University, Boston, MA, USA. a.makriyannis@northeastern.edu.ORCID http://orcid.org/0000-0003-3272-3687
Vsevolod KatritchDepartment of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA. katritch@usc.edu.ORCID http://orcid.org/0000-0003-3883-4505

Funding

Illuminating the Druggable GPCR-omeU24DK116195 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROTH, BRYAN L., SHOICHET, BRIAN K · 2017 to 2022
$14.3M
Molecular Details of Psychoactive Drug ActionsR01MH112205 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Bryan L. Roth, Brian K Shoichet · 2017 to 2026
$6.1M
Mechanistic insights into LSD actions at 5-HT2A serotonin receptorsR37DA045657 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Bryan L. Roth · 2018 to 2026
$5.8M
Structure and Function of CB2 ReceptorR01DA045020 · NIDA · NORTHEASTERN UNIVERSITY · PI BOHN, LAURA M., KATRITCH, VSEVOLOD · 2017 to 2021
$3.9M
Structure Function of CB1 Cannabinoid ReceptorR01DA041435 · NIDA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KATRITCH, VSEVOLOD, MAKRIYANNIS, ALEXANDROS · 2016 to 2020
$3.6M
CBI: Chemistry Biology InterfaceT32GM118289 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FORSBURG, SUSAN L · 2016 to 2020
$1.2M
NIDA NIH HHS R01 DA041435NIDA NIH HHS R01 DA045020NIDA NIH HHS R37 DA045657NIDDK NIH HHS U24 DK116195NIGMS NIH HHS T32 GM118289NIMH NIH HHS R01 MH112205
6 · The paper itself

Abstract

Structure-based virtual ligand screening is emerging as a key paradigm for early drug discovery owing to the availability of high-resolution target structures

Indexed as

AlgorithmsCombinatorial Chemistry TechniquesDrug DiscoveryLibraries, DigitalLigandsMolecular Docking Simulationrho-Associated KinasesLigandsrho-Associated Kinases

Identifiers

PMID34912117
PMCPMC9763054

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.