Evidence map›Paper›PMID 34912040›Full record

ArticleScientific reports2021

Fe and Zn stress induced gene expression analysis unraveled mechanisms of mineral homeostasis in common bean (Phaseolus vulgaris L.).

Uneeb Urwat, Syed Mudasir Ahmad, Antonio Masi, Nazir Ahmad Ganai, Imtiyaz Murtaza, Imran Khan, Sajad Majeed Zargar

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Uneeb UrwatProteomics Laboratory, Division of Plant Biotechnology, Sher-E-Kashmir University of Agricultural Sciences & Technology of Kashmir, Shalimar, Srinagar, Jammu & Kashmir, India.ORCID http://orcid.org/0000-0003-4109-531X
Syed Mudasir AhmadDivision of Animal Biotechnology, Sher-E-Kashmir University of Agricultural Sciences & Technology of Kashmir, Shuhama Campus, Jammu & Kashmir, India.
Antonio MasiDepartment of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), University of Padova, Padova, Italy.ORCID http://orcid.org/0000-0003-0536-5984
Nazir Ahmad GanaiDivision of Animal Biotechnology, Sher-E-Kashmir University of Agricultural Sciences & Technology of Kashmir, Shuhama Campus, Jammu & Kashmir, India.
Imtiyaz MurtazaDivisions of Basic Sciences, Sher-E-Kashmir University of Agricultural Sciences & Technology of Kashmir, Shuhama Campus, Jammu & Kashmir, India.
Imran KhanDivision of Statistics, Sher-E-Kashmir University of Agricultural Sciences & Technology of Kashmir, Shuhama Campus, Jammu & Kashmir, India.
Sajad Majeed ZargarProteomics Laboratory, Division of Plant Biotechnology, Sher-E-Kashmir University of Agricultural Sciences & Technology of Kashmir, Shalimar, Srinagar, Jammu & Kashmir, India. smzargar@skuastkashmir.ac.in.ORCID http://orcid.org/0000-0001-6649-9447
Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir · INUniversity of Padua · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Iron (Fe) and zinc (Zn) stress significantly affects fundamental metabolic and physiological processes in plants that results in reduction of plant growth and development. In the present study, common bean variety; Shalimar French Bean-1 (SFB-1) was used as an experimental material. Four different MGRL media i.e. normal MGRL medium (Control), media without Fe (0-Fe), media without Zn (0-Zn) and media with excess Zn (300-Zn) were used for growing seeds of SFB-1 under in vitro condition for three weeks under optimum conditions. Three week old shoot and root tissues were harvested from the plants grown in these four different in vitro conditions and were, subjected to Fe and Zn estimation. Further, extraction of total RNA for differential gene expression of ten candidate genes selected based on our in silico investigation and their classification, phylogeny and expression pattern was unraveled. Expression analysis of three candidate genes (OPT3, NRAMP2 and NRAMP3) in roots revealed possible cross talk among Fe/Zn stress that was further confirmed by observing less accumulation of Fe in roots under both these conditions. However, we observed, higher accumulation of Fe in shoots under 0-Fe condition compared to control that suggests precise sensing for priority based compartmentalization and partitioning leading to higher accumulation of Fe in shoots. Furthermore, the expression analysis of IRT1, FRO1 and Ferritin 1 genes under Fe/Zn stress suggested their role in uptake/transport and signaling of Fe and Zn, whereas the expression of ZIP2, NRAMP1, HA2 and GLP1 genes were highly responsive to Zn in Phaseolus vulgaris. The identified genes highly responsive to Fe and Zn stress condition can be potential candidates for overcoming mineral stress in dicot crop plants.

Indexed as

HomeostasisStress, PhysiologicalAmino Acid MotifsChromosome MappingComputational BiologyConserved SequenceData CurationEvolution, MolecularGene Expression ProfilingGene Expression Regulation, PlantIronMineralsPhaseolusPhylogenyPlant Physiological PhenomenaProteomeIronMineralsProteomeZinc

Identifiers

PMID34912040
PMCPMC8674274
OpenAlexW4200289132

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.