Evidence map›Paper›PMID 34912010›Full record

ArticleScientific reports2021

Transcriptomic and metabolic analyses revealed the modulatory effect of vernalization on glucosinolate metabolism in radish (Raphanus sativus L.).

Adji Baskoro Dwi Nugroho, Sang Woo Lee, Aditya Nurmalita Pervitasari, Heewon Moon, Dasom Choi, Jongkee Kim, Dong-Hwan Kim

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Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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3 · Its place in the literature

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7 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Adji Baskoro Dwi NugrohoDepartment of Plant Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea.
Sang Woo LeeDepartment of Plant Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea.
Aditya Nurmalita PervitasariDepartment of Plant Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea.
Heewon MoonDepartment of Plant Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea.
Dasom ChoiDepartment of Plant Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea.
Jongkee KimDepartment of Plant Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea.
Dong-Hwan KimDepartment of Plant Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea. dhkim92@cau.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vernalization is the process by which long-term cold like winter triggers transition to flowering in plants. Many biennial and perennial plants including Brassicaceae family plants require vernalization for floral transition. Not only floral transition, but dynamic physiological and metabolic changes might also take place during vernalization. However, vernalization-mediated metabolic change is merely investigated so far. One of secondary metabolites found in Brassiceceae family plants is glucosinolates (GSLs). GSLs provides defense against pathogens and herbivores attack in plants and also exhibits inhibitory activity against human cancer cell. Profiles of GSLs are highly modulated by different environmental stresses in Brassciaceae family plants. To grasp the effect of vernalization on GSLs metabolic dynamics in radish (Raphanus sativus L.), we performed transcriptomic and metabolic analysis during vernalization in radish. Through transcriptome analysis, we found many GSLs metabolic genes were significantly down-regulated by vernalization in radish plants. Ultra-High Performance Liquid Chromatography analysis also revealed that GSLs compounds were substantially reduced in vernalized radish samples compared to non-vernalized radish samples. Furthermore, we found that repressive histone modification (i.e. H3K27me3) is involved in the modulation of GSLs metabolism via epigenetic suppression of Glucoraphasatin Synthase 1 (GRS1) during vernalization in radish. This study revealed that GSLs metabolism is modulated by vernalization, suggestive of a newly identified target of vernalization in radish.

Indexed as

Gene Expression ProfilingMetabolomeMetabolomicsTranscriptomeChromosome MappingComputational BiologyGene Expression Regulation, PlantGenomicsGlucosinolatesHigh-Throughput Nucleotide SequencingMetabolic Networks and PathwaysMolecular Sequence AnnotationOrgan SpecificityRaphanusSecondary MetabolismGlucosinolates

Identifiers

PMID34912010
PMCPMC8674254

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.