Evidence map›Paper›PMID 34911752›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Combinations of slow-translating codon clusters can increase mRNA half-life in

Ajeet K Sharma, Johannes Venezian, Ayala Shiber, Günter Kramer, Bernd Bukau, Edward P O'Brien

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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  7. Chaperone requirements for de novo folding ofMolecular biology of the cell · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 4 countries.

Ajeet K SharmaDepartment of Physics, Indian Institute of Technology, Jammu 181 221, India; ajeet.sharma@iitjammu.ac.in ayalashiber@technion.ac.il epo2@psu.edu.
Johannes VenezianFaculty of Biology, Technion-Israel Institute of Technology, Haifa 3200003, Israel.
Ayala ShiberFaculty of Biology, Technion-Israel Institute of Technology, Haifa 3200003, Israel; ajeet.sharma@iitjammu.ac.in ayalashiber@technion.ac.il epo2@psu.edu.ORCID 0000-0002-3167-1494
Günter KramerCenter for Molecular Biology of the University of Heidelberg, Heidelberg D-69120, Germany.ORCID 0000-0001-7552-8393
Bernd BukauCenter for Molecular Biology of the University of Heidelberg, Heidelberg D-69120, Germany.ORCID 0000-0003-0521-7199
Edward P O'BrienDepartment of Chemistry, Pennsylvania State University, University Park, PA 16802; ajeet.sharma@iitjammu.ac.in ayalashiber@technion.ac.il epo2@psu.edu.
German Cancer Research Center · DEPennsylvania State University · USTechnion – Israel Institute of Technology · IL

Funding

Translation Kinetics and their Effects on Protein Structure and Function, mRNA half-lives, and Cellular PhenotypeR35GM124818 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI Edward Patrick O'Brien · 2017 to 2026
$4.0M
NIGMS NIH HHS R35 GM124818
6 · The paper itself

Abstract

The presence of a single cluster of nonoptimal codons was found to decrease a transcript's half-life through the interaction of the ribosome-associated quality control machinery with stalled ribosomes in

Indexed as

Protein BiosynthesisFungal ProteinsHalf-LifeModels, GeneticRNA, MessengerSaccharomyces cerevisiaeFungal ProteinsRNA, MessengermRNA half-liferibosome collisionssynonymous codons

Identifiers

PMID34911752
PMCPMC8713773
OpenAlexW4200332150

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.