Evidence map›Paper›PMID 34911733›Full record

ArticleCancer discovery2022

Ontogeny and Vulnerabilities of Drug-Tolerant Persisters in HER2+ Breast Cancer.

Chewei Anderson Chang, Jayu Jen, Shaowen Jiang, Azin Sayad, Arvind Singh Mer, Kevin R Brown, Allison M L Nixon, Avantika Dhabaria, Kwan Ho Tang, David Venet and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer discovery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed, 1 pooled it
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 1 synthesis or guideline pooled it, 109 citations in OpenAlex.

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21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 6 institutions in 3 countries.

Chewei Anderson Chang *Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.
Jayu Jen *Laura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.ORCID 0000-0002-0926-9984
Shaowen JiangApplied Bioinformatics Laboratories, Office of Science and Research, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.
Azin SayadPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
Arvind Singh MerDepartment of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0001-8510-7963
Kevin R BrownDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0002-5514-2538
Allison M L NixonDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0002-5540-4534
Avantika DhabariaProteomics Laboratory, Division of Advanced Research and Technology, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.
Kwan Ho TangPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.ORCID 0000-0001-7729-5159
David VenetBreast Cancer Translational Research Laboratory, Institut Jules Bordet Brussels and Université Libre de Bruxelles (ULB), Belgium.ORCID 0000-0001-9038-5271
Christos SotiriouBreast Cancer Translational Research Laboratory, Institut Jules Bordet Brussels and Université Libre de Bruxelles (ULB), Belgium.ORCID 0000-0002-5745-9977
Jiehui DengLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.ORCID 0000-0001-7986-8643
Kwok-Kin WongLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.
Sylvia AdamsLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.
Peter MeynGenome Technology Center, Division of Advanced Research Technologies, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.
Adriana HeguyGenome Technology Center, Division of Advanced Research Technologies, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.
Jane A SkokLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.ORCID 0000-0002-4145-1516
Aristotelis TsirigosLaura and Isaac Perlmutter Cancer Center, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.ORCID 0000-0002-7512-8477
Beatrix UeberheideProteomics Laboratory, Division of Advanced Research and Technology, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.
Jason MoffatDonnelly Centre, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0002-5663-8586
Abhyudai SinghDepartment of Electrical and Computer Engineering, University of Delaware, Newark, Delaware.
Benjamin Haibe-KainsDepartment of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0002-7684-0079
Alireza Khodadadi-JamayranApplied Bioinformatics Laboratories, Office of Science and Research, NYU Grossman School of Medicine, New York University Langone Health, New York, New York.ORCID 0000-0003-2495-7504
Benjamin G NeelDepartment of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.
NYU Langone Health · USUniversity of Toronto · CAInstitut Jules Bordet · BEPrincess Margaret Cancer Centre · CAOntario Institute for Cancer Research · CAUniversity of Delaware · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
The impact of changes in chromatin architecture on cancer phenotypes and tumor progressionP01CA229086 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Jane Amanda Skok · 2019 to 2026
$17.0M
Therapeutic Targeting of Breast Cancer Tumor Initiating CellsR01CA148761 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PEROU, CHARLES M, ROSEN, JEFFREY MARK · 2010 to 2025
$6.5M
SIGNAL TRANSDUCTION BY NON-TRANSMEMBRANE PTPSR01CA049152 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEEL, BENJAMIN G. · 1989 to 2020
$4.4M
Molecular ontology of drug tolerant persisters in HER2 positive breast cancer - Resubmission - 1R01CA264933 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BENJAMIN G. NEEL, Jane Amanda Skok · 2022 to 2026
$3.5M
Generalized fluctuation test for deciphering phenotypic switching within cell populationsR35GM148351 · NIGMS · UNIVERSITY OF DELAWARE · PI Abhyudai Singh · 2023 to 2026
$1.6M
Consequences and Control of Randomness in Timing of Intracellular EventsR01GM124446 · NIGMS · UNIVERSITY OF DELAWARE · PI SINGH, ABHYUDAI · 2017 to 2020
$914k
CIHR MOP-142375NCI NIH HHS P01 CA229086NCI NIH HHS P30 CA016087NCI NIH HHS R01 CA049152NCI NIH HHS R01 CA148761NCI NIH HHS R01 CA264933NIGMS NIH HHS R01 GM124446NIGMS NIH HHS R35 GM148351
6 · The paper itself

Abstract

Resistance to targeted therapies is an important clinical problem in HER2-positive (HER2+) breast cancer. "Drug-tolerant persisters" (DTP), a subpopulation of cancer cells that survive via reversible, nongenetic mechanisms, are implicated in resistance to tyrosine kinase inhibitors (TKI) in other malignancies, but DTPs following HER2 TKI exposure have not been well characterized. We found that HER2 TKIs evoke DTPs with a luminal-like or a mesenchymal-like transcriptome. Lentiviral barcoding/single-cell RNA sequencing reveals that HER2+ breast cancer cells cycle stochastically through a "pre-DTP" state, characterized by a G0-like expression signature and enriched for diapause and/or senescence genes. Trajectory analysis/cell sorting shows that pre-DTPs preferentially yield DTPs upon HER2 TKI exposure. Cells with similar transcriptomes are present in HER2+ breast tumors and are associated with poor TKI response. Finally, biochemical experiments indicate that luminal-like DTPs survive via estrogen receptor-dependent induction of SGK3, leading to rewiring of the PI3K/AKT/mTORC1 pathway to enable AKT-independent mTORC1 activation. SIGNIFICANCE: DTPs are implicated in resistance to anticancer therapies, but their ontogeny and vulnerabilities remain unclear. We find that HER2 TKI-DTPs emerge from stochastically arising primed cells ("pre-DTPs") that engage either of two distinct transcriptional programs upon TKI exposure. Our results provide new insights into DTP ontogeny and potential therapeutic vulnerabilities. This article is highlighted in the In This Issue feature, p. 873.

Indexed as

Breast NeoplasmsCell Line, TumorDrug Resistance, NeoplasmErb-b2 Receptor Tyrosine KinasesFemaleHumansPhosphatidylinositol 3-KinasesSignal TransductionERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesPhosphatidylinositol 3-Kinases

Identifiers

PMID34911733
PMCPMC8983469
OpenAlexW4200132645

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.