Evidence map›Paper›PMID 34910731›Full record

ArticlePloS one2021

Essential roles of buried phenylalanine in the structural stability of thioredoxin from a psychrophilic Arctic bacterium Sphingomonas sp.

Thu-Thuy Nguyen, Trang Hoang, Kiet N Tran, Hyeonji Kim, Sei-Heon Jang, ChangWoo Lee

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Thu-Thuy NguyenDepartment of Biomedical Science and Center for Bio-Nanomaterials, Daegu University, Gyeongsan, South Korea.
Trang HoangDepartment of Biomedical Science and Center for Bio-Nanomaterials, Daegu University, Gyeongsan, South Korea.
Kiet N TranDepartment of Biomedical Science and Center for Bio-Nanomaterials, Daegu University, Gyeongsan, South Korea.
Hyeonji KimDepartment of Biomedical Science and Center for Bio-Nanomaterials, Daegu University, Gyeongsan, South Korea.
Sei-Heon JangDepartment of Biomedical Science and Center for Bio-Nanomaterials, Daegu University, Gyeongsan, South Korea.
ChangWoo LeeDepartment of Biomedical Science and Center for Bio-Nanomaterials, Daegu University, Gyeongsan, South Korea.ORCID 0000-0002-0872-4500
Daegu University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thioredoxin (Trx), a small redox protein, exhibits thermal stability at high temperatures regardless of its origin, including psychrophiles. Trxs have a common structure consisting of the central β-sheet flanked by an aliphatic cluster on one side and an aromatic cluster on the other side. Although the roles of aromatic amino acids in the folding and stability of proteins have been studied extensively, the contributions of aromatic residues to the stability and function of Trx, particularly Trxs from cold-adapted organisms, have not been fully elucidated. This study examined the roles of aromatic amino acids in the aromatic cluster of a Trx from the psychrophilic Arctic bacterium Sphingomonas sp. PAMC 26621 (SpTrx). The aromatic cluster of SpTrx was comprised of W11, F26, F69, and F80, in which F26 at the β2 terminus was buried inside. The substitution of tyrosine for F26 changed the SpTrx conformation substantially compared to that of F69 and F80. Further biochemical and spectroscopic investigations on F26 showed that the F26Y, F26W, and F26A mutants resulted in structural instability of SpTrx in both urea- and temperature-induced unfolding and lower insulin reduction activities. The Trx reductase (SpTR) showed lower catalytic efficiencies against F26 mutants compared to the wild-type SpTrx. These results suggest that buried F26 is essential for maintaining the active-site conformation of SpTrx as an oxidoreductase and its structural stability for interactions with SpTR at colder temperatures.

Indexed as

Amino Acid SequenceInsulinKineticsModels, MolecularMutationPhenylalanineProtein ConformationProtein StabilityProtein UnfoldingSphingomonasThioredoxinsTyrosineInsulinPhenylalanineThioredoxinsTyrosine

Identifiers

PMID34910731
PMCPMC8673628
OpenAlexW4200154639

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.