Evidence map›Paper›PMID 34910160›Full record

ArticleInternational journal of epidemiology2022

Predicting cardiovascular risk from national administrative databases using a combined survival analysis and deep learning approach.

Sebastiano Barbieri, Suneela Mehta, Billy Wu, Chrianna Bharat, Katrina Poppe, Louisa Jorm, Rod Jackson

Abstract read
In one paragraph

Article in International journal of epidemiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 4 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Sebastiano BarbieriCentre for Big Data Research in Health, University of New South Wales, Sydney, NSW, Australia.ORCID 0000-0002-5919-372X
Suneela MehtaSection of Epidemiology and Biostatistics, University of Auckland, Auckland, New Zealand.
Billy WuSection of Epidemiology and Biostatistics, University of Auckland, Auckland, New Zealand.
Chrianna BharatNational Drug and Alcohol Research Centre, University of New South Wales, Sydney, NSW, Australia.
Katrina PoppeSection of Epidemiology and Biostatistics, University of Auckland, Auckland, New Zealand.
Louisa JormCentre for Big Data Research in Health, University of New South Wales, Sydney, NSW, Australia.ORCID 0000-0003-0390-661X
Rod JacksonSection of Epidemiology and Biostatistics, University of Auckland, Auckland, New Zealand.ORCID 0000-0001-5914-6934

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMachine learning-based risk prediction models may outperform traditional statistical models in large datasets with many variables, by identifying both novel predictors and the complex interactions between them. This study compared deep learning extensions of survival analysis models with Cox proportional hazards models for predicting cardiovascular disease (CVD) risk in national health administrative datasets.

methodsUsing individual person linkage of administrative datasets, we constructed a cohort of all New Zealanders aged 30-74 who interacted with public health services during 2012. After excluding people with prior CVD, we developed sex-specific deep learning and Cox proportional hazards models to estimate the risk of CVD events within 5 years. Models were compared based on the proportion of explained variance, model calibration and discrimination, and hazard ratios for predictor variables.

resultsFirst CVD events occurred in 61 927 of 2 164 872 people. Within the reference group, the largest hazard ratios estimated by the deep learning models were for tobacco use in women (2.04, 95% CI: 1.99, 2.10) and chronic obstructive pulmonary disease with acute lower respiratory infection in men (1.56, 95% CI: 1.50, 1.62). Other identified predictors (e.g. hypertension, chest pain, diabetes) aligned with current knowledge about CVD risk factors. Deep learning outperformed Cox proportional hazards models on the basis of proportion of explained variance (R2: 0.468 vs 0.425 in women and 0.383 vs 0.348 in men), calibration and discrimination (all P <0.0001).

conclusionsDeep learning extensions of survival analysis models can be applied to large health administrative datasets to derive interpretable CVD risk prediction equations that are more accurate than traditional Cox proportional hazards models.

Indexed as

Cardiovascular DiseasesDeep LearningFemaleHeart Disease Risk FactorsHumansMaleProportional Hazards ModelsRisk AssessmentRisk FactorsSurvival AnalysisCardiovascular diseasesdeep learninghealth planningmachine learningpopulation healthprimary preventionrisk assessmentsurvival analysis

Identifiers

PMID34910160
PMCPMC9189958

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.