Evidence map›Paper›PMID 34909066›Full record

ArticleArabian journal of chemistry2022

QSAR based virtual screening derived identification of a novel hit as a SARS CoV-229E 3CL

R D Jawarkar, Ravindrakumar L Bakal, Magdi E A Zaki, Sami Al-Hussain, Arabinda Ghosh, Ajaykumar Gandhi, Nobendu Mukerjee, Abdul Samad, Vijay H Masand, Israa Lewaa

Abstract read
In one paragraph

Article in Arabian journal of chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  5. Review
  6. Coumarin benzamide scaffold as potential 5-HTJournal of molecular modeling · 2025
    Article
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  9. Identifying Inhibitor-SARS-CoV2-3CLMolecules (Basel, Switzerland) · 2025
    Article
  10. Article
  11. Article
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  14. Article
  15. Article
  16. Inhibition of SARS-CoV-2 NSP-15 by Uridine-5'-Monophosphate Analogues Using QSAR Modelling, Molecular Dynamics Simulations, and Free Energy Landscape.Saudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

R D JawarkarDepartment of Medicinal Chemistry, Dr. Rajendra Gode Institute of Pharmacy, University-Mardi Road, Amravati, Maharashtra, 444603, India.
Ravindrakumar L BakalDepartment of Medicinal Chemistry, Dr. Rajendra Gode Institute of Pharmacy, University-Mardi Road, Amravati, Maharashtra, 444603, India.
Magdi E A ZakiDepartment of Chemistry, Faculty of Science, Al-Imam Mohammad Ibn Saud Islamic university, Riyadh 13318, Saudi Arabia.
Sami Al-HussainDepartment of Chemistry, Faculty of Science, Al-Imam Mohammad Ibn Saud Islamic university, Riyadh 13318, Saudi Arabia.
Arabinda GhoshMicrobiology Division, Department of Botany, Gauhati University, Guwahati, Assam 781014, India.
Ajaykumar GandhiDepartment of Chemistry, Government College of Arts and Science, Aurangabad, Maharashtra 431 004, India.
Nobendu MukerjeeDepartment of Microbiology; Ramakrishna Mission Vivekananda Centenary College, Akhil Mukherjee Rd, Chowdhary Para, Rahara, Khardaha, Kolkata, West Bengal 700118, India.
Abdul SamadDepartment of Pharmaceutical Chemistry, Faculty of Pharmacy, Tishk International University, Erbil, Kurdistan Region, Iraq.
Vijay H MasandDepartment of Chemistry, Vidyabharti Mahavidyalaya, Camp Road, Amravati Maharashtra, India.
Israa LewaaDepartment of Business Administration, Faculty of Business Administration, Economics & Political Science, The British University in Egypt (BUE), Cairo, Egypt.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Congruous coronavirus drug targets and analogous lead molecules must be identified as quickly as possible to produce antiviral therapeutics against human coronavirus (HCoV SARS 3CLpro) infections. In the present communication, we bear recognized a HIT candidate for HCoV SARS 3CLpro inhibition. Four Parametric GA-MLR primarily based QSAR model (R2:0.84, R2adj:0.82, Q2loo: 0.78) was once promoted using a dataset over 37 structurally diverse molecules along QSAR based virtual screening (QSAR-VS), molecular docking (MD) then molecular dynamic simulation (MDS) analysis and MMGBSA calculations. The QSAR-based virtual screening was utilized to find novel lead molecules from an in-house database of 100 molecules. The QSAR-vS successfully offered a hit molecule with an improved

Indexed as

3CLpro, 3C like ProteaseFDA, Food and Drug AdministrationGA-MLRGA-MLR, Genetic Algorithm Multilinear RegressionHCoV-HKU1, Human coronavirus HKU1HCoV-NL63, Human coronavirus NL63HCoV SARS 3CLproHCoVs, human coronavirusesLeadMD, Molecular DockingMDS, molecular dynamic simulationMERS, Middle East Respiratory SyndromeMMGBSA calculationsMMGBSA, Molecular Mechanics Generalized Born and Surface AreaMolecular docking and MD simulationOECD, Organization for Economic Corporation and DevelopmentQSAR based virtual screeningQSAR, Quantitative Structure Activity RelationshipRNA, Ribo-nucleic acidSARS, severe acute respiratory signVS, Virtual Screening

Identifiers

PMID34909066
PMCPMC8524701

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.