Evidence map›Paper›PMID 34908140›Full record

ArticleNucleic acids research2022

Multiplexed activation in mammalian cells using a split-intein CRISPR/Cas12a based synthetic transcription factor.

James W Bryson, Jamie Y Auxillos, Susan J Rosser

Abstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

James W BrysonDepartment of Quantitative Biology, Biochemistry and Biotechnology, University of Edinburgh, Edinburgh, UK.ORCID 0000-0002-5360-6300
Jamie Y AuxillosInstitute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.
Susan J RosserDepartment of Quantitative Biology, Biochemistry and Biotechnology, University of Edinburgh, Edinburgh, UK.

Funding

Biotechnology and Biological Sciences Research Council BB/M018040/1Biotechnology and Biological Sciences Research Council BB/M018229/1
6 · The paper itself

Abstract

The adoption of CRISPR systems for the generation of synthetic transcription factors has greatly simplified the process for upregulating endogenous gene expression, with a plethora of applications in cell biology, bioproduction and cell reprogramming. The recently discovered CRISPR/Cas12a (Cas12a) systems offer extended potential, as Cas12a is capable of processing its own crRNA array, to provide multiple individual crRNAs for subsequent targeting from a single transcript. Here we show the application of dFnCas12a-VPR in mammalian cells, with the Francisella novicida Cas12a (FnCas12a) possessing a shorter PAM sequence than Acidaminococcus sp. (As) or Lachnospiraceae bacterium (Lb) variants, enabling denser targeting of genomic loci, while performing just as well or even better than the other variants. We observe that synergistic activation and multiplexing can be achieved using crRNA arrays but also show that crRNAs expressed towards the 5' of 6-crRNA arrays show evidence of enhanced activity. This not only represents a more flexible tool for transcriptional modulation but further expands our understanding of the design capabilities and limitations when considering longer crRNA arrays for multiplexed targeting.

Indexed as

CRISPR-Cas SystemsBacterial ProteinsCRISPR-Associated ProteinsEndodeoxyribonucleasesGene EditingHEK293 CellsHumansProtein SplicingBacterial ProteinsCas12a proteinCRISPR-Associated ProteinsEndodeoxyribonucleases

Identifiers

PMID34908140
PMCPMC8754635

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.