Evidence map›Paper›PMID 34908127›Full record

ArticleGenome biology and evolution2021

Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer.

Kristyna Hermankova, Xenie Kourilova, Iva Pernicova, Matej Bezdicek, Martina Lengerova, Stanislav Obruca, Karel Sedlar

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Kristyna HermankovaDepartment of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Czech Republic.
Xenie KourilovaDepartment of Food Chemistry and Biotechnology, Faculty of Chemistry, Brno University of Technology, Czech Republic.
Iva PernicovaDepartment of Food Chemistry and Biotechnology, Faculty of Chemistry, Brno University of Technology, Czech Republic.
Matej BezdicekDepartment of Internal Medicine-Hematology and Oncology, University Hospital Brno, Czech Republic.
Martina LengerovaDepartment of Internal Medicine-Hematology and Oncology, University Hospital Brno, Czech Republic.
Stanislav ObrucaDepartment of Food Chemistry and Biotechnology, Faculty of Chemistry, Brno University of Technology, Czech Republic.
Karel SedlarDepartment of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Czech Republic.ORCID 0000-0002-8269-4020
Brno University of Technology · CZUniversity Hospital Brno · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tepidimonas taiwanensis is a moderately thermophilic, Gram-negative, rod-shaped, chemoorganoheterotrophic, motile bacterium. The alkaline protease producing type strain T. taiwanensis LMG 22826T was recently reported to also be a promising producer of polyhydroxyalkanoates (PHAs)-renewable and biodegradable polymers representing an alternative to conventional plastics. Here, we present its first complete genome sequence which is also the first complete genome sequence of the whole species. The genome consists of a single 2,915,587-bp-long circular chromosome with GC content of 68.75%. Genome annotation identified 2,764 genes in total while 2,634 open reading frames belonged to protein-coding genes. Although functional annotation of the genome and division of genes into Clusters of Orthologous Groups (COGs) revealed a relatively high number of 694 genes with unknown function or unknown COG, the majority of genes were assigned a function. Most of the genes, 406 in total, were involved in energy production and conversion, and amino acid transport and metabolism. Moreover, particular key genes involved in the metabolism of PHA were identified. Knowledge of the genome in connection with the recently reported ability to produce bioplastics from the waste stream of wine production makes T. taiwanensis LMG 22826T, an ideal candidate for further genome engineering as a bacterium with high biotechnological potential.

Indexed as

BurkholderialesPolyhydroxyalkanoatesBacterial ProteinsEndopeptidasesSequence Analysis, DNAalkaline proteaseBacterial ProteinsEndopeptidasesPolyhydroxyalkanoatesalkaline proteasefunctional annotationhybrid assemblyOxford Nanopore TechnologiespolyhydroxyalkanoatesTepidimonas taiwanensis

Identifiers

PMID34908127
PMCPMC8715522
OpenAlexW4200237356

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.