ArticleCurrent microbiology2021
Vibrio Clade 3.0: New Vibrionaceae Evolutionary Units Using Genome-Based Approach.
Article in Current microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed.
- Vibrio frigidus sp. nov., Isolated from the Gills of Atlantic Salmon (Salmo salar).Current microbiology · 2026Article
- Vibrio rubrogenes sp. nov., prodigiosin producing halophilic bacterium from seaweed Sargassum wightii of Mandapam coast, India.Scientific reports · 2026Article
- Microbial Life Inside Posidonia Seeds: Beneficial Endophytes and Implications for Marine Plant Health.MicrobiologyOpen · 2026Article
- Genome Mining and Functional Characterization of Agarases from a Novel Vibrio Species.Marine biotechnology (New York, N.Y.) · 2026Article
- Beyond AMR and virulence databases: genome wide associations of closely relatedFrontiers in microbiology · 2026Article
- A novel phage vB_VhaM_HVS-1 inhibits host cell associatedFrontiers in veterinary science · 2026Article
- Comparative genomics reveals specialization and divergent virulence potential inApplied and environmental microbiology · 2025Article
- Hybridization capture sequencing formBio · 2025Article
- Diverse marineMarine life science & technology · 2025Article
- Distribution and Evolutionary Trajectories of β-Lactamases in Vibrio: Genomic Insights from Carbenicillin-Hydrolyzing Class A β-Lactamases (CARB) in the Harveyi and Cholerae Clades.Genome biology and evolution · 2025Article
- Vibrio iocasae sp. nov., a bacterium isolated from the gill homogenate of bivalve lucinids Indoaustriella scarlatoi in intertidal mangrove sediments.Antonie van Leeuwenhoek · 2025Article
- Antimicrobial resistance ofApplied and environmental microbiology · 2025Article
- Description and Genome-Based Analysis ofMicroorganisms · 2025Article
- Replicon family of Vibrionaceae plasmids as a reservoir of antimicrobial and phage resistance genes in marine ecosystems.The ISME journal · 2025Article
- Article
- Polyphasic identification of Vibrio species from aquatic sources using mass spectrometry, housekeeping gene sequencing and whole genome analysis.Scientific reports · 2024Article
- The Microbiota of the Outer Gut Mucus Layer of the Migrating Northeast Arctic Cod (Microorganisms · 2024Article
- Diversity of Culturable Bacteria from the Coral Reef Areas in the South China Sea and Their Agar-Degrading Abilities.Microorganisms · 2024Article
- Complete genome sequence of a winter seasonMicrobial genomics · 2024Article
- Characteristics and pathogenicity ofFrontiers in cellular and infection microbiology · 2024Article
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8 authors.
Funding
Abstract
Currently, over 190 species in family Vibrionaceae, including not-yet-cultured taxa, have been described and classified into over nine genera, in which the number of species has doubled compared to the previous vibrio evolutionary update (Vibrio Clade 2.0) (Sawabe et al. 2014). In this study, "Vibrio Clade 3.0," the second update of the molecular phylogenetic analysis was performed based on nucleotide sequences of eight housekeeping genes (8-HKGs) retrieved from genome sequences, including 22 newly determined genomes. A total of 51 distinct clades were observed, of which 21 clades are newly described. We further evaluated the delineation powers of the clade classification based on nucleotide sequences of 34 single-copy genes and 11 ribosomal protein genes (11-RPGs) retrieved from core-genome sequences; however, the delineation power of 8-HKGs is still high and that gene set can be reliably used for the classification and identification of Vibrionaceae. Furthermore, the 11-RPGs set proved to be useful in identifying uncultured species among metagenome-assembled genome (MAG) and/or single-cell genome-assembled genome (SAG) pools. This study expands the awareness of the diversity and evolutionary history of the family Vibrionaceae and accelerates the taxonomic applications in classifying as not-yet-cultured taxa among MAGs and SAGs.
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