Evidence map›Paper›PMID 34904864›Full record

ArticlemSystems2021

Redirected Stress Responses in a Genome-Minimized 'midi

Rocío Aguilar Suárez, Minia Antelo-Varela, Sandra Maaß, Jolanda Neef, Dörte Becher, Jan Maarten van Dijl

Open access · goldAbstract read
In one paragraph

Article in mSystems, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Metabolic Profile of the Genome-ReducedACS synthetic biology · 2024
    Article
  6. Promising non-model microbial cell factories obtained by genome reduction.Frontiers in bioengineering and biotechnology · 2024
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Rocío Aguilar SuárezUniversity of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0003-4452-065X
Minia Antelo-VarelaUniversity of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Greifswald, Germany.
Sandra MaaßUniversity of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Greifswald, Germany.ORCID 0000-0002-6573-1088
Jolanda NeefUniversity of Groningen, University Medical Center Groningen, Groningen, the Netherlands.
Dörte BecherUniversity of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Greifswald, Germany.
Jan Maarten van DijlUniversity of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0002-5688-8438
Universität Greifswald · DEUniversity Medical Center Groningen · NL

Funding

Consejo Nacional de Ciencia y Tecnología (CONACYT)Horizon 2020 program of the European Union 642836Horizon 2020 program of the European Union Horizon 2020 program of European Union
6 · The paper itself

Abstract

Genome engineering offers the possibility to create completely novel cell factories with enhanced properties for biotechnological applications. In recent years, genome minimization was extensively explored in the Gram-positive bacterial cell factory Bacillus subtilis, where up to 42% of the genome encoding dispensable functions was removed. Such studies showed that some strains with minimized genomes gained beneficial features, especially for secretory protein production. However, strains with the most minimal genomes displayed growth defects. This focused our attention on strains with less extensive genomic deletions that display close-to-wild-type growth properties while retaining the acquired beneficial traits in secretory protein production. A strain of this category is B. subtilis IIG-Bs27-47-24, here referred to as midi

Indexed as

Bacillus subtilisgenome minimizationprotein secretionproteomicsSec pathwaysignal peptidase

Identifiers

PMID34904864
PMCPMC8670375
OpenAlexW4200489170

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.