Evidence map›Paper›PMID 34903857›Full record

ArticleNature chemistry2022

Imitation of β-lactam binding enables broad-spectrum metallo-β-lactamase inhibitors.

Jürgen Brem, Tharindi Panduwawala, Jon Ulf Hansen, Joanne Hewitt, Edgars Liepins, Pawel Donets, Laura Espina, Alistair J M Farley, Kirill Shubin, Gonzalo Gomez Campillos and 51 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
4.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Fighting Antimicrobial Resistance: Innovative Drugs in Antibacterial Research.Angewandte Chemie (International ed. in English) · 2025
    Review
  10. Strategic re-engineering of antibiotics.Nature reviews bioengineering · 2025
    Article
  11. Review
  12. Mechanism-guided strategies for combating antibiotic resistance.World journal of microbiology & biotechnology · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

61 authors at 15 institutions in 11 countries.

Jürgen BremDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK. jurgen.brem@chem.ox.ac.uk.ORCID http://orcid.org/0000-0002-0137-3226
Tharindi PanduwawalaDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-7095-1336
Jon Ulf HansenStatens Serum Institut, Copenhagen, Denmark.
Joanne HewittUniversity of Dundee, European Screening Centre, BioCity Scotland, Newhouse, UK.
Edgars LiepinsLatvian Institute of Organic Synthesis, Riga, Latvia.
Pawel DonetsLatvian Institute of Organic Synthesis, Riga, Latvia.ORCID http://orcid.org/0000-0003-4358-2429
Laura EspinaDepartment of Medical Microbiology, Institute of infection & Immunity, Cardiff University, Cardiff, UK.
Alistair J M FarleyDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.
Kirill ShubinLatvian Institute of Organic Synthesis, Riga, Latvia.
Gonzalo Gomez CampillosDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-2405-8421
Paula KiuruDrug Research Program, Division of Pharmaceutical Chemistry and Technology, Faculty of Pharmacy, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0001-6084-684X
Shifali ShishodiaDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-8727-3877
Daniel KrahnDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.
Robert K LeśniakDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.
Juliane Schmidt AdrianDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.
Karina CalvopiñaDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.
María-Carmen TurrientesDepartment of Microbiology, Ramón y Cajal University Hospital and Ramón y Cajal Institute for Health Research (IRYCIS), Madrid, Spain.
Madeline E KavanaghDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-4735-1559
Dmitrijs LubriksLatvian Institute of Organic Synthesis, Riga, Latvia.ORCID http://orcid.org/0000-0002-8014-4172
Philip HinchliffeSchool of Cellular and Molecular Medicine, University of Bristol, Bristol, UK.
Gareth W LangleyDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-0875-3712
Ali F AboklaishDepartment of Medical Microbiology, Institute of infection & Immunity, Cardiff University, Cardiff, UK.
Anders EnerothDepartment of Pharmacy, Uppsala Drug Optimization and Pharmaceutical Profiling Platform (UDOPP), Uppsala University, Uppsala, Sweden.
Maria BacklundDepartment of Pharmacy, Uppsala Drug Optimization and Pharmaceutical Profiling Platform (UDOPP), Uppsala University, Uppsala, Sweden.ORCID http://orcid.org/0000-0002-6253-816X
Andrei G BaranLatvian Institute of Organic Synthesis, Riga, Latvia.
Elisabet I NielsenDepartment of Pharmacy, Uppsala University, Uppsala, Sweden.ORCID http://orcid.org/0000-0003-0725-214X
Michael SpeakeUniversity of Dundee, European Screening Centre, BioCity Scotland, Newhouse, UK.
Janis KukaLatvian Institute of Organic Synthesis, Riga, Latvia.
John RobinsonUniversity of Dundee, European Screening Centre, BioCity Scotland, Newhouse, UK.
Solveiga GrinbergaLatvian Institute of Organic Synthesis, Riga, Latvia.
Lindsay RobinsonUniversity of Dundee, European Screening Centre, BioCity Scotland, Newhouse, UK.
Michael A McDonoughDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-4664-6942
Anna M RydzikDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.
Thomas M LeissingDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.
Juan Carlos Jimenez-CastellanosSchool of Cellular and Molecular Medicine, University of Bristol, Bristol, UK.
Matthew B AvisonSchool of Cellular and Molecular Medicine, University of Bristol, Bristol, UK.
Solange Da Silva PintoDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.
Andrew D PanniferUniversity of Dundee, European Screening Centre, BioCity Scotland, Newhouse, UK.
Marina MartjugaLatvian Institute of Organic Synthesis, Riga, Latvia.
Emma WidlakeDepartment of Medical Microbiology, Institute of infection & Immunity, Cardiff University, Cardiff, UK.ORCID http://orcid.org/0000-0001-6721-8643
Martins PriedeLatvian Institute of Organic Synthesis, Riga, Latvia.ORCID http://orcid.org/0000-0002-9655-8345
Iva Hopkins NavratilovaUniversity of Dundee, European Screening Centre, BioCity Scotland, Newhouse, UK.
Marek GniadkowskiDepartment of Molecular Microbiology, National Medicines Institute, Warsaw, Poland.
Anna Karin BelfrageDepartment of Medicinal Chemistry, Drug Design and Discovery, Uppsala University, Uppsala, Sweden.ORCID http://orcid.org/0000-0002-6257-4064
Peter BrandtDepartment of Medicinal Chemistry, Drug Design and Discovery, Uppsala University, Uppsala, Sweden.ORCID http://orcid.org/0000-0002-2885-2016
Jari Yli-KauhaluomaDrug Research Program, Division of Pharmaceutical Chemistry and Technology, Faculty of Pharmacy, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0003-0370-7653
Eric BacqueEvotec Infectious Diseases Lyon, Marcy l'Etoile, France.
Malcolm G P PageJacobs University Bremen gGmbH, Bremen, Germany.ORCID http://orcid.org/0000-0002-0276-8174
Fredrik BjörklingDepartment of Drug Design and Pharmacology, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0001-7018-8334
Jonathan M TyrrellDepartment of Medical Microbiology, Institute of infection & Immunity, Cardiff University, Cardiff, UK.
James SpencerSchool of Cellular and Molecular Medicine, University of Bristol, Bristol, UK.ORCID http://orcid.org/0000-0002-4602-0571
Pauline A LangDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-3187-1469
Pawel BaranczewskiDepartment of Pharmacy, SciLifeLab Drug Discovery and Development Platform, ADME of Therapeutics Facility, Uppsala University, Uppsala, Sweden.ORCID http://orcid.org/0000-0001-5772-6791
Rafael CantónDepartment of Microbiology, Ramón y Cajal University Hospital and Ramón y Cajal Institute for Health Research (IRYCIS), Madrid, Spain.ORCID http://orcid.org/0000-0003-1675-3173
Stuart P McElroyUniversity of Dundee, European Screening Centre, BioCity Scotland, Newhouse, UK.
Philip S JonesUniversity of Dundee, European Screening Centre, BioCity Scotland, Newhouse, UK.
Fernando BaqueroDepartment of Microbiology, Ramón y Cajal University Hospital and Ramón y Cajal Institute for Health Research (IRYCIS), Madrid, Spain.
Edgars SunaLatvian Institute of Organic Synthesis, Riga, Latvia.ORCID http://orcid.org/0000-0002-3078-0576
Angus MorrisonUniversity of Dundee, European Screening Centre, BioCity Scotland, Newhouse, UK.
Timothy R WalshDepartment of Medical Microbiology, Institute of infection & Immunity, Cardiff University, Cardiff, UK.
Christopher J SchofieldDepartment of Chemistry, Chemistry Research Laboratory and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, UK. christopher.schofield@chem.ox.ac.uk.ORCID http://orcid.org/0000-0002-0290-6565
University of Oxford · GBLatvijas Organiskās Sintēzes Institūts · LVUniversity of Dundee · GBUppsala University · SECardiff University · GBUniversity of Bristol · GBInstituto Cajal · ESUniversity of Helsinki · FICentre National de la Recherche Scientifique · FRConstructor University · DEMedical College of Wisconsin · USNarodowy Instytut Leków · PLScripps Research Institute · USStatens Serum Institut · DKUniversity of Copenhagen · DK

Funding

A Mechanism-Based Approach to Metallo-beta-Lactamase InhibitionR01AI100560 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BONOMO, ROBERT A., SPENCER, JAMES · 2012 to 2022
$4.4M
Biotechnology and Biological Sciences Research Council BB/L01386X/1Biotechnology and Biological Sciences Research Council BB/M012107/1Biotechnology and Biological Sciences Research Council BB/S50676X/1Cancer Research UK 24759Cancer Research UK C9047/A24759Medical Research Council MR/P007295/1Medical Research Council MR/S013768/1Medical Research Council MR/S013768/2NIAID NIH HHS R01 AI100560Wellcome Trust 099141/Z/12/ZWellcome Trust 106244/Z/14/Z
6 · The paper itself

Abstract

Carbapenems are vital antibiotics, but their efficacy is increasingly compromised by metallo-β-lactamases (MBLs). Here we report the discovery and optimization of potent broad-spectrum MBL inhibitors. A high-throughput screen for NDM-1 inhibitors identified indole-2-carboxylates (InCs) as potential β-lactamase stable β-lactam mimics. Subsequent structure-activity relationship studies revealed InCs as a new class of potent MBL inhibitor, active against all MBL classes of major clinical relevance. Crystallographic studies revealed a binding mode of the InCs to MBLs that, in some regards, mimics that predicted for intact carbapenems, including with respect to maintenance of the Zn(II)-bound hydroxyl, and in other regards mimics binding observed in MBL-carbapenem product complexes. InCs restore carbapenem activity against multiple drug-resistant Gram-negative bacteria and have a low frequency of resistance. InCs also have a good in vivo safety profile, and when combined with meropenem show a strong in vivo efficacy in peritonitis and thigh mouse infection models.

Indexed as

Animalsbeta-Lactamase Inhibitorsbeta-LactamsGram-Negative BacteriaHumansMiceMicrobial Sensitivity TestsProtein BindingStructure-Activity Relationshipbeta-Lactamase Inhibitorsbeta-Lactams

Identifiers

PMID34903857
OpenAlexW4200605971

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.