Evidence map›Paper›PMID 34903049›Full record

ArticlemBio2021

Yeast Double Transporter Gene Deletion Library for Identification of Xenobiotic Carriers in Low or High Throughput.

Ludimila Dias Almeida, Ali Salim Faraj Silva, Daniel Calixto Mota, Adrielle Ayumi Vasconcelos, Antônio Pedro Camargo, Gabriel Silva Pires, Monique Furlan, Helena Martins Ribeiro da Cunha Freire, Angélica Hollunder Klippel, Suélen Fernandes Silva and 4 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  3. Deorphanizing solute carriers inFrontiers in microbiology · 2024
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  4. Screening ofFrontiers in microbiology · 2023
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  5. Analysis of a Library ofAntibiotics (Basel, Switzerland) · 2022
    Article
  6. Article
  7. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Ludimila Dias AlmeidaSynthetic Biology Laboratory, Department of Structural and Functional Biology, Institute of Biology, University of Campinas-UNICAMP, Campinas, São Paulo, Brazil.
Ali Salim Faraj SilvaSynthetic Biology Laboratory, Department of Structural and Functional Biology, Institute of Biology, University of Campinas-UNICAMP, Campinas, São Paulo, Brazil.
Daniel Calixto MotaSynthetic Biology Laboratory, Department of Structural and Functional Biology, Institute of Biology, University of Campinas-UNICAMP, Campinas, São Paulo, Brazil.
Adrielle Ayumi VasconcelosLaboratory of Genomics and BioEnergy, Department of Genetics, Evolution, Microbiology and Immunology, Institute of Biology, University of Campinas-UNICAMP, Campinas, São Paulo, Brazil.
Antônio Pedro CamargoLaboratory of Genomics and BioEnergy, Department of Genetics, Evolution, Microbiology and Immunology, Institute of Biology, University of Campinas-UNICAMP, Campinas, São Paulo, Brazil.
Gabriel Silva PiresSynthetic Biology Laboratory, Department of Structural and Functional Biology, Institute of Biology, University of Campinas-UNICAMP, Campinas, São Paulo, Brazil.
Monique FurlanSynthetic Biology Laboratory, Department of Structural and Functional Biology, Institute of Biology, University of Campinas-UNICAMP, Campinas, São Paulo, Brazil.
Helena Martins Ribeiro da Cunha FreireSynthetic Biology Laboratory, Department of Structural and Functional Biology, Institute of Biology, University of Campinas-UNICAMP, Campinas, São Paulo, Brazil.
Angélica Hollunder KlippelSchool of Pharmaceutical Sciences, São Paulo State University-UNESP, Araraquara, São Paulo, Brazil.
Suélen Fernandes SilvaChemistry Institute, São Paulo State University-UNESP, Araraquara, São Paulo, Brazil.
Cleslei Fernando ZanelliSchool of Pharmaceutical Sciences, São Paulo State University-UNESP, Araraquara, São Paulo, Brazil.
Marcelo Falsarella CarazzolleLaboratory of Genomics and BioEnergy, Department of Genetics, Evolution, Microbiology and Immunology, Institute of Biology, University of Campinas-UNICAMP, Campinas, São Paulo, Brazil.
Stephen G OliverCambridge Systems Biology Centre, University of Cambridgegrid.5335.0, Cambridge, United Kingdom.ORCID 0000-0003-3410-6439
Elizabeth BilslandSynthetic Biology Laboratory, Department of Structural and Functional Biology, Institute of Biology, University of Campinas-UNICAMP, Campinas, São Paulo, Brazil.ORCID 0000-0002-8697-3553
Universidade Estadual de Campinas (UNICAMP) · BRUniversidade Estadual Paulista (Unesp) · BRUniversity of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F008228/1
6 · The paper itself

Abstract

The routes of uptake and efflux should be considered when developing new drugs so that they can effectively address their intracellular targets. As a general rule, drugs appear to enter cells via protein carriers that normally carry nutrients or metabolites. A previously developed pipeline that searched for drug transporters using Saccharomyces cerevisiae mutants carrying single-gene deletions identified import routes for most compounds tested. However, due to the redundancy of transporter functions, we propose that this methodology can be improved by utilizing double mutant strains in both low- and high-throughput screens. We constructed a library of over 14,000 strains harboring double deletions of genes encoding 122 nonessential plasma membrane transporters and performed low- and high-throughput screens identifying possible drug import routes for 23 compounds. In addition, the high-throughput assay enabled the identification of putative efflux routes for 21 compounds. Focusing on azole antifungals, we were able to identify the involvement of the

Indexed as

Gene DeletionAntifungal AgentsATP-Binding Cassette TransportersBiological TransportGene LibraryHigh-Throughput Screening AssaysMonosaccharide Transport ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsXenobioticsAntifungal AgentsATP-Binding Cassette TransportersITR1 protein, S cerevisiaeMonosaccharide Transport ProteinsPDR5 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsXenobioticsdrug effluxdrug transportdrug uptakegenetic interactionsnonessential transporter double-deletion libraryplasma membrane transporterSaccharomyces cerevisiaexenobioticsyeast

Identifiers

PMID34903049
PMCPMC8669479
OpenAlexW3212351654

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.