Evidence map›Paper›PMID 34901326›Full record

ArticleVirusdisease2021

First complete genome characterization of duck plague virus from India.

Ashutosh Aasdev, Satyam D Pawar, Anamika Mishra, Chandan K Dubey, Sharan S Patil, Sophia M Gogoi, Durlav P Bora, Nagendra N Barman, Ashwin A Raut

Abstract read
In one paragraph

Article in Virusdisease, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ashutosh AasdevPathogenomics Lab, ICAR - National Institute of High Security Animal Diseases, Bhopal, Madhya Pradesh 462022 India.
Satyam D PawarPathogenomics Lab, ICAR - National Institute of High Security Animal Diseases, Bhopal, Madhya Pradesh 462022 India.
Anamika MishraPathogenomics Lab, ICAR - National Institute of High Security Animal Diseases, Bhopal, Madhya Pradesh 462022 India.
Chandan K DubeyPathogenomics Lab, ICAR - National Institute of High Security Animal Diseases, Bhopal, Madhya Pradesh 462022 India.
Sharan S PatilICAR-National Institute of Veterinary Epidemiology and Disease Informatics, Bengaluru, Karnataka India.
Sophia M GogoiDepartment of Microbiology, College of Veterinary Science, Assam Agricultural University, Guwahati, Assam 781022 India.
Durlav P BoraDepartment of Microbiology, College of Veterinary Science, Assam Agricultural University, Guwahati, Assam 781022 India.
Nagendra N BarmanDepartment of Microbiology, College of Veterinary Science, Assam Agricultural University, Guwahati, Assam 781022 India.
Ashwin A RautPathogenomics Lab, ICAR - National Institute of High Security Animal Diseases, Bhopal, Madhya Pradesh 462022 India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we report the complete genome sequencing of the Duck plague virus from India for the first time. The sequencing was done on the MinION nanopore sequencer from Oxford Nanopore Technologies. The closest relative is the European strain 2085v, with 99.98 and 99.8% identity at the amino acid and nucleotide level respectively. Moreover, 72 out of 77 ORFs are completely conserved between the 2 strains. The high similarity with the European strain over the only three other pathogenic strains reported from China points to the circulation of European strain in India. The fly pathways of migratory birds and co-habitation with native species being a probable reason. More complete genome data from diverse sampling locations are needed to characterize the genomic features, develop diagnostics, vaccines, and understand the evolution of the virus.

Indexed as

Anatid alphaherpesvirus 1Duck plagueDuck viral enteritisNanopore sequencingNorth-eastern India

Identifiers

PMID34901326
PMCPMC8630295

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.