Evidence map›Paper›PMID 34900133›Full record

ArticleComputational and structural biotechnology journal2021

Spatial and temporal dynamics of microbiomes and resistomes in broiler litter stockpiles.

Chhedi Lal Gupta, Ran Avidov, Karuppasamy Kattusamy, Ibrahim Saadi, Vempalli Sudharsan Varma, Shlomo E Blum, Yong-Guan Zhu, Xin-Yuan Zhou, Jian-Qiang Su, Yael Laor and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Computational and structural biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Chhedi Lal GuptaDepartment of Soil Chemistry, Plant Nutrition and Microbiology, Institute of Soil, Water and Environmental Sciences, The Volcani Institute, Agriculture Research Organization, 7528809 Rishon Lezion, Israel.
Ran AvidovInstitute of Soil, Water and Environmental Sciences, Volcani Institute, Agricultural Research Organization, Newe Ya'ar Research Center, Ramat Yishai, 30095, Israel.
Karuppasamy KattusamyDepartment of Soil Chemistry, Plant Nutrition and Microbiology, Institute of Soil, Water and Environmental Sciences, The Volcani Institute, Agriculture Research Organization, 7528809 Rishon Lezion, Israel.
Ibrahim SaadiInstitute of Soil, Water and Environmental Sciences, Volcani Institute, Agricultural Research Organization, Newe Ya'ar Research Center, Ramat Yishai, 30095, Israel.
Vempalli Sudharsan VarmaInstitute of Soil, Water and Environmental Sciences, Volcani Institute, Agricultural Research Organization, Newe Ya'ar Research Center, Ramat Yishai, 30095, Israel.
Shlomo E BlumDepartment of Bacteriology, Kimron Veterinary Institute, 50250 Beit Dagan, Israel.
Yong-Guan ZhuKey Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.
Xin-Yuan ZhouKey Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.
Jian-Qiang SuKey Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.
Yael LaorInstitute of Soil, Water and Environmental Sciences, Volcani Institute, Agricultural Research Organization, Newe Ya'ar Research Center, Ramat Yishai, 30095, Israel.
Eddie CytrynDepartment of Soil Chemistry, Plant Nutrition and Microbiology, Institute of Soil, Water and Environmental Sciences, The Volcani Institute, Agriculture Research Organization, 7528809 Rishon Lezion, Israel.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Farmers apply broiler chicken litter to soils to enrich organic matter and provide crops with nutrients, following varying periods of stockpiling. However, litter frequently harbors fecal-derived microbial pathogens and associated antibiotic resistance genes (ARGs), and may be a source of microbial contamination of produce. We coupled a cutting-edge Loop Genomics long-read 16S rRNA amplicon-sequencing platform with high-throughput qPCR that targeted a suite of ARGs, to assess temporal (five time points over a 60-day period) and spatial (top, middle and bottom layers) microbiome and resistome dynamics in a broiler litter stockpile. We focused on potentially pathogenic species from the

Indexed as

Antibiotic resistance bacteriaAntibiotic resistance geneBioinformaticsBroiler litterLong-read sequencingMicrobiome

Identifiers

PMID34900133
PMCPMC8637134

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.