Evidence map›Paper›PMID 34898670›Full record

ArticleAIChE journal. American Institute of Chemical Engineers2021

Antibody screening at reduced pH enables preferential selection of potently neutralizing antibodies targeting SARS-CoV-2.

Bharat Madan, Eswar R Reddem, Pengfei Wang, Ryan G Casner, Manoj S Nair, Yaoxing Huang, Ahmed S Fahad, Matheus Oliveira de Souza, Bailey B Banach, Sheila N López Acevedo and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in AIChE journal. American Institute of Chemical Engineers, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Optimized single-cell gates for yeast display screening.Protein engineering, design & selection : PEDS · 2025
    Article
  4. Backstage Heroes-Yeast in COVID-19 Research.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 1 country.

Bharat MadanDepartment of Pharmaceutical Chemistry The University of Kansas Lawrence Kansas USA.ORCID https://orcid.org/0000-0002-7376-9991
Eswar R ReddemDepartment of Biochemistry and Molecular Biophysics Columbia University New York New York USA.
Pengfei WangAaron Diamond AIDS Research Center Columbia University Irving Medical Center New York New York USA.
Ryan G CasnerDepartment of Biochemistry and Molecular Biophysics Columbia University New York New York USA.
Manoj S NairAaron Diamond AIDS Research Center Columbia University Irving Medical Center New York New York USA.ORCID https://orcid.org/0000-0002-5994-3957
Yaoxing HuangAaron Diamond AIDS Research Center Columbia University Irving Medical Center New York New York USA.
Ahmed S FahadDepartment of Pharmaceutical Chemistry The University of Kansas Lawrence Kansas USA.
Matheus Oliveira de SouzaDepartment of Pharmaceutical Chemistry The University of Kansas Lawrence Kansas USA.
Bailey B BanachDepartment of Pharmaceutical Chemistry The University of Kansas Lawrence Kansas USA.
Sheila N López AcevedoDepartment of Pharmaceutical Chemistry The University of Kansas Lawrence Kansas USA.
Xiaoli PanDepartment of Pharmaceutical Chemistry The University of Kansas Lawrence Kansas USA.
Rajani NimraniaDepartment of Pharmaceutical Chemistry The University of Kansas Lawrence Kansas USA.
I-Ting TengVaccine Research Center National Institute of Allergy and Infectious Diseases Bethesda Maryland USA.
Fabiana BahnaDepartment of Biochemistry and Molecular Biophysics Columbia University New York New York USA.
Tongqing ZhouVaccine Research Center National Institute of Allergy and Infectious Diseases Bethesda Maryland USA.
Baoshan ZhangVaccine Research Center National Institute of Allergy and Infectious Diseases Bethesda Maryland USA.
Michael T YinDepartment of Medicine, Division of Infectious Diseases Columbia University Irving Medical Center New York New York USA.
David D HoAaron Diamond AIDS Research Center Columbia University Irving Medical Center New York New York USA.
Peter D KwongDepartment of Biochemistry and Molecular Biophysics Columbia University New York New York USA.
Lawrence ShapiroDepartment of Biochemistry and Molecular Biophysics Columbia University New York New York USA.
Brandon J DeKoskyDepartment of Pharmaceutical Chemistry The University of Kansas Lawrence Kansas USA.
University of Kansas · USAaron Diamond AIDS Research Center · USNational Institute of Allergy and Infectious Diseases · USColumbia University · USColumbia University Irving Medical Center · US

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
The influence of evolutionary landscapes on protective antibody developmentR01AI141452 · NIAID · UNIVERSITY OF COLORADO · PI WHITEHEAD, TIMOTHY ANDREW · 2019 to 2023
$2.8M
Comprehensive analysis of human adaptive immune receptors to elucidate correlates of Epstein-Barr virus disease suppressionDP5OD023118 · OD · UNIVERSITY OF KANSAS LAWRENCE · PI DEKOSKY, BRANDON JAMES · 2016 to 2022
$2.2M
Comprehensive molecular and functional analyses of anti-HIV-1 broadly neutralizing antibody repertoiresR21AI143407 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI DEKOSKY, BRANDON JAMES, FORREST, MARCUS LAIRD · 2019 to 2020
$435k
Probing antigen specificity and response of autoimmune B cells in Neuromyelitis OpticaR21AI144408 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI DEKOSKY, BRANDON JAMES · 2019 to 2020
$417k
NIAID NIH HHS R01 AI141452NIAID NIH HHS R21 AI143407NIAID NIH HHS R21 AI144408NIGMS NIH HHS P20 GM103418NIH HHS DP5 OD023118
6 · The paper itself

Abstract

Antiviral monoclonal antibody (mAb) discovery enables the development of antibody-based antiviral therapeutics. Traditional antiviral mAb discovery relies on affinity between antibody and a viral antigen to discover potent neutralizing antibodies, but these approaches are inefficient because many high affinity mAbs have no neutralizing activity. We sought to determine whether screening for anti-SARS-CoV-2 mAbs at reduced pH could provide more efficient neutralizing antibody discovery. We mined the antibody response of a convalescent COVID-19 patient at both physiological pH (7.4) and reduced pH (4.5), revealing that SARS-CoV-2 neutralizing antibodies were preferentially enriched in pH 4.5 yeast display sorts. Structural analysis revealed that a potent new antibody called LP5 targets the SARS-CoV-2 N-terminal domain supersite via a unique binding recognition mode. Our data combine with evidence from prior studies to support antibody screening at pH 4.5 to accelerate antiviral neutralizing antibody discovery.

Indexed as

antibody discoveryCOVID‐19SARS‐CoV‐2yeast display

Identifiers

PMID34898670
PMCPMC8646896
OpenAlexW3200348433

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.