Evidence map›Paper›PMID 34898604›Full record

ArticlePLoS computational biology2021

From decision to action: Detailed modelling of frog tadpoles reveals neuronal mechanisms of decision-making and reproduces unpredictable swimming movements in response to sensory signals.

Andrea Ferrario, Andrey Palyanov, Stella Koutsikou, Wenchang Li, Steve Soffe, Alan Roberts, Roman Borisyuk

Abstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Mechanisms Underlying the Recruitment of Inhibitory Interneurons in Fictive Swimming in DevelopingThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Andrea FerrarioCollege of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter, United Kingdom.ORCID 0000-0001-9082-1555
Andrey PalyanovA.P. Ershov Institute of Informatics Systems, Siberian Branch, Russian Academy of Sciences, Novosibirsk, Russia.ORCID 0000-0003-1108-1486
Stella KoutsikouMedway School of Pharmacy, University of Kent, Chatham Maritime, United Kingdom.ORCID 0000-0003-2933-3637
Wenchang LiSchool of Psychology and Neuroscience, University of St. Andrews, St Andrews, United Kingdom.
Steve SoffeSchool of Biological Sciences, University of Bristol, Bristol, United Kingdom.ORCID 0000-0001-9731-7423
Alan RobertsSchool of Biological Sciences, University of Bristol, Bristol, United Kingdom.
Roman BorisyukCollege of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter, United Kingdom.ORCID 0000-0003-1384-9057

Funding

Biotechnology and Biological Sciences Research Council BB/L000814/1Biotechnology and Biological Sciences Research Council BB/T002352/1Biotechnology and Biological Sciences Research Council BB/T003146
6 · The paper itself

Abstract

How does the brain process sensory stimuli, and decide whether to initiate locomotor behaviour? To investigate this question we develop two whole body computer models of a tadpole. The "Central Nervous System" (CNS) model uses evidence from whole-cell recording to define 2300 neurons in 12 classes to study how sensory signals from the skin initiate and stop swimming. In response to skin stimulation, it generates realistic sensory pathway spiking and shows how hindbrain sensory memory populations on each side can compete to initiate reticulospinal neuron firing and start swimming. The 3-D "Virtual Tadpole" (VT) biomechanical model with realistic muscle innervation, body flexion, body-water interaction, and movement is then used to evaluate if motor nerve outputs from the CNS model can produce swimming-like movements in a volume of "water". We find that the whole tadpole VT model generates reliable and realistic swimming. Combining these two models opens new perspectives for experiments.

Indexed as

Models, NeurologicalAnimalsAnuraBiomechanical PhenomenaComputational BiologyDecision MakingLarvaPatch-Clamp TechniquesRhombencephalonSwimming

Identifiers

PMID34898604
PMCPMC8699619

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.