Evidence map›Paper›PMID 34897929›Full record

ArticleChembiochem : a European journal of chemical biology2022

Monitoring the Response of Multiple Signal Network Components to Acute Chemo-Optogenetic Perturbations in Living Cells.

Manuela Kowalczyk, Dominic Kamps, Yaowen Wu, Leif Dehmelt, Perihan Nalbant

Open access · hybridAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Manuela KowalczykDepartment of Molecular Cell Biology, Center for Medical Biotechnology, University of Duisburg-Essen, 45141, Essen, Germany.
Dominic KampsDepartment of Chemistry and Chemical Biology and Department of Systemic Cell Biology, TU Dortmund University and Max-Planck-Institute of Molecular Physiology, 44227, Dortmund, Germany.
Yaowen WuDepartment of Chemistry, Umeå Centre for Microbial Research, Umeå University, 901 87, Umeå, Sweden.
Leif DehmeltDepartment of Chemistry and Chemical Biology and Department of Systemic Cell Biology, TU Dortmund University and Max-Planck-Institute of Molecular Physiology, 44227, Dortmund, Germany.
Perihan NalbantDepartment of Molecular Cell Biology, Center for Medical Biotechnology, University of Duisburg-Essen, 45141, Essen, Germany.ORCID 0000-0002-5649-5933
TU Dortmund University · DEUniversity of Duisburg-Essen · DEUmeå University · SE

Funding

DFG DE 823/3-1DFG DE 823/4-1DFG DE 823/6-1DFG DE 823/8-1ERC (ChemBioAP) 2018-04585Goran Gustafsson Foundation"Imaging Centre Campus Essen" (ICCE), Centre for Medical Biotechnology (ZMB), University of Duisburg-EssenKnut and Alice Wallenberg Foundation
6 · The paper itself

Abstract

Cells process information via signal networks that typically involve multiple components which are interconnected by feedback loops. The combination of acute optogenetic perturbations and microscopy-based fluorescent response readouts enables the direct investigation of causal links in such networks. However, due to overlaps in spectra of photosensitive and fluorescent proteins, current approaches that combine these methods are limited. Here, we present an improved chemo-optogenetic approach that is based on switch-like perturbations induced by a single, local pulse of UV light. We show that this approach can be combined with parallel monitoring of multiple fluorescent readouts to directly uncover relations between signal network components. We present the application of this technique to directly investigate feedback-controlled regulation in the cell contraction signal network that includes GEF-H1, Rho and Myosin, and functional interactions of this network with tumor relevant RhoA G17 mutants.

Indexed as

OptogeneticsCell Line, TumorHumansMutationMyosinsrhoA GTP-Binding ProteinRho Guanine Nucleotide Exchange FactorsUltraviolet RaysARHGEF2 protein, humanMyosinsrhoA GTP-Binding ProteinRHOA protein, humanRho Guanine Nucleotide Exchange FactorsoptogeneticsphotocagingRhoAsensorssignal networks

Identifiers

PMID34897929
PMCPMC9303927
OpenAlexW4200223333

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.