Evidence map›Paper›PMID 34897464›Full record

ArticleGenetics2022

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources.

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek and 2 more

Abstract read
In one paragraph

Article in Genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. RiboScreenBiomedicines · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Yeast adapts to diverse ecological niches driven by genomics and metabolic reprogramming.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  19. Article
  20. Phosphate-solubilizing function ofMicrobiology spectrum · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Stacia R EngelDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Edith D WongDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Robert S NashDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Suzi AleksanderDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Micheal AlexanderDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Eric DouglassDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Kalpana KarraDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Stuart R MiyasatoDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Matt SimisonDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Marek S SkrzypekDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Shuai WengDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
J Michael CherryDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA.

Funding

Text mining in the CloudU24HG010859 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI CAROL J BULT, PAUL Warren STERNBERG · 2019 to 2026
$42.0M
Resource ProjectU41HG002273 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHERRY, J. MICHAEL, MUNGALL, CHRISTOPHER J · 2012 to 2021
$34.7M
WormBase: a core data resource for C. elegans and other nematodesU24HG002223 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI TIM SCHEDL, PAUL Warren STERNBERG · 2018 to 2026
$18.9M
Genomic Resource for the Yeast SaccharomycesU24HG001315 · NHGRI · STANFORD UNIVERSITY · PI Stacia Engel, Gavin J Sherlock · 2021 to 2026
$10.9M
NHGRI NIH HHS U24 HG001315NHGRI NIH HHS U24 HG002223NHGRI NIH HHS U24 HG010859NHGRI NIH HHS U41 HG002273
6 · The paper itself

Abstract

Saccharomyces cerevisiae is used to provide fundamental understanding of eukaryotic genetics, gene product function, and cellular biological processes. Saccharomyces Genome Database (SGD) has been supporting the yeast research community since 1993, serving as its de facto hub. Over the years, SGD has maintained the genetic nomenclature, chromosome maps, and functional annotation, and developed various tools and methods for analysis and curation of a variety of emerging data types. More recently, SGD and six other model organism focused knowledgebases have come together to create the Alliance of Genome Resources to develop sustainable genome information resources that promote and support the use of various model organisms to understand the genetic and genomic bases of human biology and disease. Here we describe recent activities at SGD, including the latest reference genome annotation update, the development of a curation system for mutant alleles, and new pages addressing homology across model organisms as well as the use of yeast to study human disease.

Indexed as

SaccharomycesAllelesDatabases, GeneticGenome, FungalHumansSaccharomyces cerevisiaeAlliance of Genome Resourcesknowledgebasereference genomeSaccharomyces cerevisiaeSaccharomyces Genome Database

Identifiers

PMID34897464
PMCPMC9209811

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.