ArticleNature communications2021
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.
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Who cites it
71 citing papers in PubMed, 124 citations in OpenAlex.
- Carbohydrate-active enzymes from a core root mycobiota member enable infection of multiple plant hosts.Nature microbiology · 2026Article
- Whole genome sequencing and annotation of a non-pathogenic Fusarium brachygibbosum TZ1MST22 strain isolated from Medicago sativa in Southern Tunisian oases.Functional & integrative genomics · 2026Article
- Endophytic and ectomycorrhizal, an overlooked dual ecological niche? Insights from natural environments and Russula species.The New phytologist · 2026Article
- Entomopathogenic fungi: beyond biocontrol-unravelling mechanisms of enhanced plant abiotic stress tolerance.Crop health · 2026Review
- Plant-associated fungi co-opt ancient antimicrobials for host manipulation.Science advances · 2026Article
- Ability of Different Bacteria from Grapevine to ColonizePlants (Basel, Switzerland) · 2026Article
- Transposable Element-Driven Genomic Plasticity: Unveiling the Evolutionary Mechanisms of Lifestyle Transition and Ecological Adaptation in Endophytic Fungi.Journal of fungi (Basel, Switzerland) · 2026Article
- Forecasting influenza activity based on internet retrieval behavior and meteorological data in four megacities of China.BMC infectious diseases · 2026Article
- Domain gain or loss in a fungal chitinase enables specialization towards antagonism or immune suppression.Nature communications · 2026Article
- Chromosome-scale Genome Assembly of the Most Abundant Ectomycorrhizal Fungus Cenococcum Geophilum Reveals Massive TE Expansion and RIP Defense Mechanism.Genome biology and evolution · 2026Article
- Decoding dark septate endophyte symbiosis: a functional and ecological perspective.FEMS microbiology reviews · 2026Review
- Plant cell walls as a key driver of plant-pathogen coevolution.FEMS microbiology reviews · 2026Review
- Article
- Unearthing a fungal giant:Frontiers in fungal biology · 2026Article
- Systematic study ofIMA fungus · 2026Article
- Root growth promotion bybioRxiv : the preprint server for biology · 2025Article
- Unravelling the Functional Diversity of Type III Polyketide Synthases in Fungi.Angewandte Chemie (International ed. in English) · 2025Article
- Cooperation between a root fungal endophyte and host-derived coumarin scopoletin mediates Arabidopsis iron nutrition.The New phytologist · 2025Article
- Diversity and dynamics of fungal endophytes in the roots of Amomum villosum lour. Under different areas and growth ages.BMC microbiology · 2025Article
- Patterns and mechanisms of fungal genome plasticity.Current biology : CB · 2025Review
11 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
23 authors at 9 institutions in 7 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The roots of Arabidopsis thaliana host diverse fungal communities that affect plant health and disease states. Here, we sequence the genomes of 41 fungal isolates representative of the A. thaliana root mycobiota for comparative analysis with other 79 plant-associated fungi. Our analyses indicate that root mycobiota members evolved from ancestors with diverse lifestyles and retain large repertoires of plant cell wall-degrading enzymes (PCWDEs) and effector-like small secreted proteins. We identify a set of 84 gene families associated with endophytism, including genes encoding PCWDEs acting on xylan (family GH10) and cellulose (family AA9). Transcripts encoding these enzymes are also part of a conserved transcriptional program activated by phylogenetically-distant mycobiota members upon host contact. Recolonization experiments with individual fungi indicate that strains with detrimental effects in mono-association with the host colonize roots more aggressively than those with beneficial activities, and dominate in natural root samples. Furthermore, we show that the pectin-degrading enzyme family PL1_7 links aggressiveness of endophytic colonization to plant health.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.