Evidence map›Paper›PMID 34893046›Full record

ArticleBMC cancer2021

Immune landscape of advanced gastric cancer tumor microenvironment identifies immunotherapeutic relevant gene signature.

Simeng Zhang, Mengzhu Lv, Yu Cheng, Shuo Wang, Ce Li, Xiujuan Qu

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Advances in the molecular subtyping of gastric cancer.World journal of surgical oncology · 2026
    Review
  3. Article
  4. Review
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  12. ADAMDEC1 accelerates GBM progressionFrontiers in oncology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Simeng ZhangDepartment of Medical Oncology, the First Hospital of China Medical University, 110001, Shenyang, China.
Mengzhu LvDepartment of Plastic Surgery, the First Hospital of China Medical University, Shenyang, 110001, China.
Yu ChengDepartment of Medical Oncology, the First Hospital of China Medical University, 110001, Shenyang, China.
Shuo WangDepartment of Medical Oncology, the First Hospital of China Medical University, 110001, Shenyang, China.
Ce LiDepartment of Medical Oncology, the First Hospital of China Medical University, 110001, Shenyang, China.
Xiujuan QuDepartment of Medical Oncology, the First Hospital of China Medical University, 110001, Shenyang, China. xiujuanqu@yahoo.com.
China Medical University · CNMinistry of Education · KNFirst Hospital of China Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAdvanced gastric cancer (AGC) is a disease with poor prognosis due to the current lack of effective therapeutic strategies. Immune checkpoint blockade treatments have shown effective responses in patient subgroups but biomarkers remain challenging. Traditional classification of gastric cancer (GC) is based on genomic profiling and molecular features. Therefore, it is critical to identify the immune-related subtypes and predictive markers by immuno-genomic profiling.

methodsSingle-sample gene-set enrichment analysis (ssGSEA) and ESTIMATE algorithm were used to identify the immue-related subtypes of AGC in two independent GEO datasets. Weighted gene co-expression network analysis (WGCNA) and Molecular Complex Detection (MCODE) algorithm were applied to identify hub-network of immune-related subtypes. Hub genes were confirmed by prognostic data of KMplotter and GEO datasets. The value of hub-gene in predicting immunotherapeutic response was analyzed by IMvigor210 datasets. MTT assay, Transwell migration assay and Western blotting were performed to confirm the cellular function of hub gene in vitro.

resultsThree immune-related subtypes (Immunity_H, Immunity_M and Immunity_L) of AGC were identified in two independent GEO datasets. Compared to Immunity_L, the Immuntiy_H subtype showed higher immune cell infiltration and immune activities with favorable prognosis. A weighted gene co-expression network was constructed based on GSE62254 dataset and identified one gene module which was significantly correlated with the Immunity_H subtype. A Hub-network which represented high immune activities was extracted based on topological features and Molecular Complex Detection (MCODE) algorithm. Furthermore, ADAM like decysin 1 (ADAMDEC1) was identified as a seed gene among hub-network genes which is highly associated with favorable prognosis in both GSE62254 and external validation datasets. In addition, high expression of ADAMDEC1 correlated with immunotherapeutic response in IMvigor210 datasets. In vitro, ADAMDEC1 was confirmed as a potential protein in regulating proliferation and migration of gastric cancer cell. Deficiency of ADAMDEC1 of gastric cancer cell also associated with high expression of PD-L1 and Jurkat T cell apoptosis.

conclusionsWe identified immune-related subtypes and key tumor microenvironment marker in AGC which might facilitate the development of novel immune therapeutic targets.

Indexed as

Stomach NeoplasmsTranscriptomeTumor MicroenvironmentADAM ProteinsAdultAgedAged, 80 and overAlgorithmsDatabases, GeneticFemaleGene Expression ProfilingHumansImmunotherapyJurkat CellsMaleMiddle AgedADAM ProteinsdecysinADAMDEC1Advanced gastric cancerImmuno-genomic profilingTumor microenvironmentWGCNA

Identifiers

PMID34893046
PMCPMC8665569
OpenAlexW4225463546

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.