Evidence map›Paper›PMID 34890461›Full record

ArticlePlant physiology2021

The transcription factor ORA59 exhibits dual DNA binding specificity that differentially regulates ethylene- and jasmonic acid-induced genes in plant immunity.

Young Nam Yang, Youngsung Kim, Hyeri Kim, Su Jin Kim, Kwang-Moon Cho, Yerin Kim, Dong Sook Lee, Myoung-Hoon Lee, Soo Young Kim, Jong Chan Hong and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Young Nam YangDepartment of Life Sciences, Korea University, Seoul 02841, Korea.
Youngsung KimDepartment of Life Sciences, Korea University, Seoul 02841, Korea.
Hyeri KimDepartment of Life Sciences, Korea University, Seoul 02841, Korea.
Su Jin KimDepartment of Life Sciences, Korea University, Seoul 02841, Korea.
Kwang-Moon ChoMolecular Diagnosis Division, AccuGene, Incheon 22006, Korea.
Yerin KimDepartment of Biomedical Sciences, Korea University College of Medicine, Seoul 02841, Korea.ORCID 0000-0001-7460-6142
Dong Sook LeeDepartment of Life Sciences, Korea University, Seoul 02841, Korea.
Myoung-Hoon LeeDepartment of Life Sciences, Korea University, Seoul 02841, Korea.
Soo Young KimDepartment of Biotechnology and Kumho Life Science Laboratory, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186, Korea.ORCID 0000-0002-4804-0111
Jong Chan HongDivision of Life Science, Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 52828, Korea.ORCID 0000-0002-7036-813X
Sun Jae KwonMolecular Diagnosis Division, AccuGene, Incheon 22006, Korea.
Jungmin ChoiDepartment of Biomedical Sciences, Korea University College of Medicine, Seoul 02841, Korea.
Ohkmae K ParkDepartment of Life Sciences, Korea University, Seoul 02841, Korea.ORCID 0000-0002-0234-6908
Korea University · KRChonnam National University · KRGyeongsang National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Jasmonic acid (JA) and ethylene (ET) signaling modulate plant defense against necrotrophic pathogens in a synergistic and interdependent manner, while JA and ET also have independent roles in certain processes, e.g. in responses to wounding and flooding, respectively. These hormone pathways lead to transcriptional reprogramming, which is a major part of plant immunity and requires the roles of transcription factors. ET response factors are responsible for the transcriptional regulation of JA/ET-responsive defense genes, of which ORA59 functions as a key regulator of this process and has been implicated in the JA-ET crosstalk. We previously demonstrated that Arabidopsis (Arabidopsis thaliana) GDSL LIPASE 1 (GLIP1) depends on ET for gene expression and pathogen resistance. Here, promoter analysis of GLIP1 revealed ERELEE4 as the critical cis-element for ET-responsive GLIP1 expression. In a yeast one-hybrid screening, ORA59 was isolated as a specific transcription factor that binds to the ERELEE4 element, in addition to the well-characterized GCC box. We found that ORA59 regulates JA/ET-responsive genes through direct binding to these elements in gene promoters. Notably, ORA59 exhibited a differential preference for GCC box and ERELEE4, depending on whether ORA59 activation is achieved by JA and ET, respectively. JA and ET induced ORA59 phosphorylation, which was required for both activity and specificity of ORA59. Furthermore, RNA-seq and virus-induced gene silencing analyses led to the identification of ORA59 target genes of distinct functional categories in JA and ET pathways. Our results provide insights into how ORA59 can generate specific patterns of gene expression dynamics through JA and ET hormone pathways.

Indexed as

ArabidopsisArabidopsis ProteinsCyclopentanesDNA-Binding ProteinsDNA, PlantEthylenesOxylipinsPlant ImmunityTranscription FactorsArabidopsis ProteinsCyclopentanesDNA-Binding ProteinsDNA, PlantethyleneEthylenesjasmonic acidORA59 protein, ArabidopsisOxylipinsTranscription Factors

Identifiers

PMID34890461
PMCPMC8644270
OpenAlexW3199267649

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.