Evidence map›Paper›PMID 34887863›Full record

ArticleFrontiers in immunology2021

Identification, Characterization, and Transcriptional Reprogramming of Epithelial Stem Cells and Intestinal Enteroids in Simian Immunodeficiency Virus Infected Rhesus Macaques.

Nongthombam Boby, Xuewei Cao, Alyssa Ransom, Barcley T Pace, Christopher Mabee, Monica N Shroyer, Arpita Das, Peter J Didier, Sudesh K Srivastav, Edith Porter and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Nongthombam BobyDivision of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, United States.
Xuewei CaoDepartment of Mathematical Sciences, Michigan Technological University, Houghton, MI, United States.
Alyssa RansomDivision of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, United States.
Barcley T PaceDivision of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, United States.
Christopher MabeeDivision of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, United States.
Monica N ShroyerDivision of Veterinary Medicine, Tulane National Primate Research Center, Covington, LA, United States.
Arpita DasDivision of Microbiology, Tulane National Primate Research Center, Covington, LA, United States.
Peter J DidierDivision of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, United States.
Sudesh K SrivastavDepartment of Biostatistics, Tulane University, New Orleans, LA, United States.
Edith PorterDepartment of Biological Sciences, California State University, Los Angeles, Los Angeles, CA, United States.
Qiuying ShaDepartment of Mathematical Sciences, Michigan Technological University, Houghton, MI, United States.
Bapi PaharDivision of Comparative Pathology, Tulane National Primate Research Center, Covington, LA, United States.
Tulane University · USMichigan Technological University · USCalifornia State University Los Angeles · US

Funding

Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
Impact of HIV/SIV Infection on Paneth and Intestinal Stem Cell InteractionR01DK109883 · NIDDK · TULANE UNIVERSITY OF LOUISIANA · PI DIDIER, PETER J · 2017 to 2020
$3.0M
6 · The paper itself

Abstract

Epithelial cell injury and impaired epithelial regeneration are considered key features in HIV pathogenesis and contribute to HIV-induced generalized immune activation. Understanding the molecular mechanisms underlying the disrupted epithelial regeneration might provide an alternative approach for the treatment of HIV-mediated enteropathy and immune activation. We have observed a significant increased presence of α defensin5+ (HD5) Paneth cells and proliferating Ki67+ epithelial cells as well as decreased expression of E-cadherin expression in epithelial cells during SIV infection. SIV infection did not significantly influence the frequency of LGR5+ stem cells, but the frequency of HD5+ cells was significantly higher compared to uninfected controls in jejunum. Our global transcriptomics analysis of enteroids provided novel information about highly significant changes in several important pathways like metabolic, TCA cycle, and oxidative phosphorylation, where the majority of the differentially expressed genes were downregulated in enteroids grown from chronically SIV-infected macaques compared to the SIV-uninfected controls. Despite the lack of significant reduction in LGR5+ stem cell population, the dysregulation of several intestinal stem cell niche factors including Notch, mTOR, AMPK and Wnt pathways as well as persistence of inflammatory cytokines and chemokines and loss of epithelial barrier function in enteroids further supports that SIV infection impacts on epithelial cell proliferation and intestinal homeostasis.

Indexed as

AnimalsCellular ReprogrammingEpithelial CellsFemaleGene Expression ProfilingGene OntologyHost-Pathogen InteractionsIntestine, SmallMacaca mulattaMaleOrganoidsRNA-SeqSignal TransductionSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusStem Cellsalpha defensinepithelial cellsintestinal stem cell (ISC)LGR5SIV

Identifiers

PMID34887863
PMCPMC8650114
OpenAlexW3214773343

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.