Evidence map›Paper›PMID 34887842›Full record

ArticleFrontiers in microbiology2021

Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System.

Aditi Sengupta, Till H M Volkmann, Robert E Danczak, James C Stegen, Katerina Dontsova, Nate Abramson, Aaron S Bugaj, Michael J Volk, Katarena A Matos, Antonio A Meira-Neto and 6 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Aditi SenguptaDepartment of Biology, California Lutheran University, Thousand Oaks, CA, United States.
Till H M VolkmannBiosphere 2, University of Arizona, Tucson, AZ, United States.
Robert E DanczakEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, United States.
James C StegenEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, United States.
Katerina DontsovaDepartment of Environmental Science, University of Arizona, Tucson, AZ, United States.
Nate AbramsonDepartment of Geosciences, University of Arizona, Tucson, AZ, United States.
Aaron S BugajBiosphere 2, University of Arizona, Tucson, AZ, United States.
Michael J VolkDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Champaign, IL, United States.
Katarena A MatosBiosphere 2, University of Arizona, Tucson, AZ, United States.
Antonio A Meira-NetoDepartment of Hydrology and Atmospheric Sciences, University of Arizona, Tucson, AZ, United States.
Albert BarberánDepartment of Environmental Science, University of Arizona, Tucson, AZ, United States.
Julia W NeilsonDepartment of Environmental Science, University of Arizona, Tucson, AZ, United States.
Raina M MaierDepartment of Environmental Science, University of Arizona, Tucson, AZ, United States.
Jon ChoroverDepartment of Environmental Science, University of Arizona, Tucson, AZ, United States.
Peter A TrochDepartment of Hydrology and Atmospheric Sciences, University of Arizona, Tucson, AZ, United States.
Laura K MeredithSchool of Natural Resources and the Environment, University of Arizona, Tucson, AZ, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial communities in incipient soil systems serve as the only biotic force shaping landscape evolution. However, the underlying ecological forces shaping microbial community structure and function are inadequately understood. We used amplicon sequencing to determine microbial taxonomic assembly and metagenome sequencing to evaluate microbial functional assembly in incipient basaltic soil subjected to precipitation. Community composition was stratified with soil depth in the pre-precipitation samples, with surficial communities maintaining their distinct structure and diversity after precipitation, while the deeper soil samples appeared to become more uniform. The structural community assembly remained deterministic in pre- and post-precipitation periods, with homogenous selection being dominant. Metagenome analysis revealed that carbon and nitrogen functional potential was assembled stochastically. Sub-populations putatively involved in the nitrogen cycle and carbon fixation experienced counteracting assembly pressures at the deepest depths, suggesting the communities may functionally assemble to respond to short-term environmental fluctuations and impact the landscape-scale response to perturbations. We propose that contrasting assembly forces impact microbial structure and potential function in an incipient landscape;

Indexed as

16S amplicon sequencingcommunity assemblyincipient soillandscape evolutionmetagenome

Identifiers

PMID34887842
PMCPMC8650109

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.