Evidence map›Paper›PMID 34887558›Full record

ArticleNature structural & molecular biology2021

How asymmetric DNA replication achieves symmetrical fidelity.

Zhi-Xiong Zhou, Scott A Lujan, Adam B Burkholder, Jordan St Charles, Joseph Dahl, Corinne E Farrell, Jessica S Williams, Thomas A Kunkel

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
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  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. bioRxiv : the preprint server for biology · 2024
    Article
  12. Review
  13. Article
  14. Extrinsic proofreading.DNA repair · 2022
    Review
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zhi-Xiong ZhouGenome Integrity & Structural Biology Laboratory, NIH/NIEHS, DHHS, Research Triangle Park, Durham, NC, USA.ORCID http://orcid.org/0000-0001-6163-9367
Scott A LujanGenome Integrity & Structural Biology Laboratory, NIH/NIEHS, DHHS, Research Triangle Park, Durham, NC, USA.
Adam B BurkholderIntegrative Bioinformatics Support Group, NIH/NIEHS, DHHS, Research Triangle Park, Durham, NC, USA.
Jordan St CharlesGenome Integrity & Structural Biology Laboratory, NIH/NIEHS, DHHS, Research Triangle Park, Durham, NC, USA.
Joseph DahlGenome Integrity & Structural Biology Laboratory, NIH/NIEHS, DHHS, Research Triangle Park, Durham, NC, USA.
Corinne E FarrellGenome Integrity & Structural Biology Laboratory, NIH/NIEHS, DHHS, Research Triangle Park, Durham, NC, USA.ORCID http://orcid.org/0000-0002-6303-4588
Jessica S WilliamsGenome Integrity & Structural Biology Laboratory, NIH/NIEHS, DHHS, Research Triangle Park, Durham, NC, USA.
Thomas A KunkelGenome Integrity & Structural Biology Laboratory, NIH/NIEHS, DHHS, Research Triangle Park, Durham, NC, USA. kunkel@niehs.nih.gov.ORCID http://orcid.org/0000-0002-9900-1788

Funding

Structure-Function Studies Of DNA Replication FidelityZ01ES065070 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI KUNKEL, THOMAS A · 1991 to 2008
$4.3M
Intramural NIH HHS Z01 ES065070
6 · The paper itself

Abstract

Accurate DNA replication of an undamaged template depends on polymerase selectivity for matched nucleotides, exonucleolytic proofreading of mismatches, and removal of remaining mismatches via DNA mismatch repair (MMR). DNA polymerases (Pols) δ and ε have 3'-5' exonucleases into which mismatches are partitioned for excision in cis (intrinsic proofreading). Here we provide strong evidence that Pol δ can extrinsically proofread mismatches made by itself and those made by Pol ε, independently of both Pol δ's polymerization activity and MMR. Extrinsic proofreading across the genome is remarkably efficient. We report, with unprecedented accuracy, in vivo contributions of nucleotide selectivity, proofreading, and MMR to the fidelity of DNA replication in Saccharomyces cerevisiae. We show that extrinsic proofreading by Pol δ improves and balances the fidelity of the two DNA strands. Together, we depict a comprehensive picture of how nucleotide selectivity, proofreading, and MMR cooperate to achieve high and symmetrical fidelity on the two strands.

Indexed as

DNA, FungalDNA Mismatch RepairDNA Polymerase IIDNA Polymerase IIIDNA ReplicationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNA, FungalDNA Polymerase IIDNA Polymerase IIISaccharomyces cerevisiae Proteins

Identifiers

PMID34887558
PMCPMC8815454

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.