Evidence map›Paper›PMID 34887385›Full record

ArticleTranslational psychiatry2021

DNA methylation in the inflammatory genes after neurosurgery and diagnostic ability of post-operative delirium.

Takehiko Yamanashi, Takaaki Nagao, Nadia E Wahba, Pedro S Marra, Kaitlyn J Crutchley, Alissa A Meyer, Ally J Andreasen, Mandy M Hellman, Sydney S Jellison, Christopher G Hughes and 6 more

Open access · goldAbstract read
In one paragraph

Article in Translational psychiatry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Takehiko YamanashiStanford University School of Medicine, Department of Psychiatry and Behavioral Sciences, Palo Alto, CA, USA. yamatake@stanford.edu.ORCID 0000-0002-3881-8997
Takaaki NagaoUniversity of Iowa Carver College of Medicine, Department of Neurosurgery, Iowa City, IA, USA.
Nadia E WahbaUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA.
Pedro S MarraUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA.
Kaitlyn J CrutchleyUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA.
Alissa A MeyerUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA.
Ally J AndreasenUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA.
Mandy M HellmanUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA.
Sydney S JellisonUniversity of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA.
Christopher G HughesVanderbilt University Medical Center, Department of anesthesiology, Nashville, TN, USA.
Pratik P PandharipandeVanderbilt University Medical Center, Department of anesthesiology, Nashville, TN, USA.
Matthew A Howard IiiUniversity of Iowa Carver College of Medicine, Department of Neurosurgery, Iowa City, IA, USA.
Hiroto KawasakiUniversity of Iowa Carver College of Medicine, Department of Neurosurgery, Iowa City, IA, USA.
Masaaki IwataTottori University Faculty of Medicine, Department of Neuropsychiatry, Yonago-shi, Tottori, Japan.ORCID 0000-0002-6143-0181
Marco M HeftiUniversity of Iowa Carver College of Medicine, Department of Pathology, Iowa City, IA, USA.
Gen ShinozakiStanford University School of Medicine, Department of Psychiatry and Behavioral Sciences, Palo Alto, CA, USA. gens@stanford.edu.ORCID 0000-0001-6129-2789
University of Iowa · USVanderbilt University Medical Center · USTottori University · JP

Funding

Identification of Epigenetics Correlates between Brain and Peripheral TissuesR01MH119165 · NIMH · UNIVERSITY OF IOWA · PI SHINOZAKI, GEN · 2020 to 2024
$3.0M
NIMH NIH HHS R01 MH119165
6 · The paper itself

Abstract

The pathophysiological mechanisms of postoperative delirium (POD) are still not clear, and no reliable biomarker is available to differentiate those with and without POD. Pre- and post-surgery blood from epilepsy subjects undergoing neurosurgery were collected. DNA methylation (DNAm) levels of the TNF gene, IL1B gene, and IL6 gene by the Illumina EPIC array method, and DNAm levels of the TNF gene by pyrosequencing, were analyzed. Blood from 37 subjects were analyzed by the EPIC array method, and blood from 27 subjects were analyzed by pyrosequencing. Several CpGs in the TNF gene in preoperative blood showed a negative correlation between their DNAm and age both in the POD group and in the non-POD group. However, these negative correlations were observed only in the POD group after neurosurgery. Neurosurgery significantly altered DNAm levels at 17 out of 24 CpG sites on the TNF gene, 8 out of 14 CpG sites on the IL1B gene, and 4 out of 14 CpG sites on the IL6 gene. Furthermore, it was found that the Inflammatory Methylation Index (IMI), which was based on the post-surgery DNAm levels at the selected five CpG sites, can be a potential detection tool for delirium with moderate accuracy; area under the curve (AUC) value was 0.84. The moderate accuracy of this IMI was replicated using another cohort from our previous study, in which the AUC was 0.79. Our findings provide further evidence of the potential role of epigenetics and inflammation in the pathophysiology of delirium.

Indexed as

DeliriumNeurosurgeryCpG IslandsDNA MethylationEpigenesis, GeneticHumans

Identifiers

PMID34887385
PMCPMC8660911
OpenAlexW4200614626

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.