Evidence map›Paper›PMID 34885724›Full record

ArticleMolecules (Basel, Switzerland)2021

SugarDrawer: A Web-Based Database Search Tool with Editing Glycan Structures.

Shinichiro Tsuchiya, Masaaki Matsubara, Kiyoko F Aoki-Kinoshita, Issaku Yamada

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shinichiro TsuchiyaThe Noguchi Institute, Tokyo 173-0003, Japan.
Masaaki MatsubaraThe Noguchi Institute, Tokyo 173-0003, Japan.ORCID 0000-0001-6809-1568
Kiyoko F Aoki-KinoshitaGraduate School of Science and Engineering, Soka University, Tokyo 192-8577, Japan.
Issaku YamadaThe Noguchi Institute, Tokyo 173-0003, Japan.ORCID 0000-0001-9504-189X

Funding

Japan Science and Technology Agency 17934031NIH HHS U01-GM125267-01
6 · The paper itself

Abstract

In life science fields, database integration is progressing and contributing to collaboration between different research fields, including the glycosciences. The integration of glycan databases has greatly progressed collaboration worldwide with the development of the international glycan structure repository, GlyTouCan. This trend has increased the need for a tool by which researchers in various fields can easily search glycan structures from integrated databases. We have developed a web-based glycan structure search tool, SugarDrawer, which supports the depiction of glycans including ambiguity, such as glycan fragments which contain underdetermined linkages, and a database search for glycans drawn on the canvas. This tool provides an easy editing feature for various glycan structures in just a few steps using template structures and pop-up windows which allow users to select specific information for each structure element. This tool has a unique feature for selecting possible attachment sites, which is defined in the Symbol Nomenclature for Glycans (SNFG). In addition, this tool can input and output glycans in WURCS and GlycoCT formats, which are the most commonly-used text formats for glycan structures.

Indexed as

Databases, FactualInternetSoftwareBiological Science DisciplinesHumansPolysaccharidesPolysaccharidesdatabase searchdrawing softwareglycan structureGlycoCTSNFG notationWURCS

Identifiers

PMID34885724
PMCPMC8659005

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.