Evidence map›Paper›PMID 34883264›Full record

ArticleDNA repair2022

XPA is susceptible to proteolytic cleavage by cathepsin L during lysis of quiescent cells.

Saman Khan, William Cvammen, Nadeen Anabtawi, Jun-Hyuk Choi, Michael G Kemp

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Saman KhanDepartment of Pharmacology and Toxicology, Wright State University Boonshoft School of Medicine, Dayton, OH, USA.
William CvammenDepartment of Pharmacology and Toxicology, Wright State University Boonshoft School of Medicine, Dayton, OH, USA.
Nadeen AnabtawiDepartment of Pharmacology and Toxicology, Wright State University Boonshoft School of Medicine, Dayton, OH, USA.
Jun-Hyuk ChoiBiometrology Group, Division of Chemical and Biological Metrology, Korea Research Institute of Standards and Science, Daejeon 305-340, Republic of Korea; Department of Bio-Analytical Science, University of Science & Technology, Daejeon 305-340, Republic of Korea.
Michael G KempDepartment of Pharmacology and Toxicology, Wright State University Boonshoft School of Medicine, Dayton, OH, USA; Dayton Veterans Administration Medical Center, Dayton, OH, USA. Electronic address: mike.kemp@wright.edu.
Wright State University · USKorea University of Science and Technology · KR

Funding

DNA damage response kinase signaling in non-replicating human cells and tissuesR01GM130583 · NIGMS · WRIGHT STATE UNIVERSITY · PI KEMP, MICHAEL GEORGE · 2019 to 2023
$1.5M
Mapping DNA Repair and Error-Prone DNA Synthesis in Geriatric SkinI01CX002241 · VA · DAYTON VA MEDICAL CENTER · PI Michael George Kemp · 2021 to 2026
–
CSRD VA I01 CX002241NIGMS NIH HHS R01 GM130583
6 · The paper itself

Abstract

The xeroderma pigmentosum group A (XPA) protein plays an essential role in the removal of UV photoproducts and other bulky lesions from DNA as a component of the nucleotide excision repair (NER) machinery. Using cell lysates prepared from confluent cultures of human cells and from human skin epidermis, we observed an additional XPA antibody-reactive band on immunoblots that was approximately 3-4 kDa smaller than the native, full-length XPA protein. Biochemical studies revealed this smaller molecular weight XPA species to be due to proteolysis at the C-terminus of the protein, which negatively impacted the ability of XPA to interact with the NER protein TFIIH. Further work identified the endopeptidase cathepsin L, which is expressed at higher levels in quiescent cells, as the protease responsible for cleaving XPA during cell lysis. These results suggest that supplementation of lysis buffers with inhibitors of cathepsin L is important to prevent cleavage of XPA during lysis of confluent cells.

Indexed as

Cathepsin LCells, CulturedDNA RepairHumansProteolysisXeroderma Pigmentosum Group A ProteinCathepsin LCTSL protein, humanXeroderma Pigmentosum Group A ProteinXPA protein, humanCathepsinKeratinocyteNucleotide excision repairProteolysisQuiescenceUV radiationXPA

Identifiers

PMID34883264
PMCPMC8748394
OpenAlexW3216432342

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.