Evidence map›Paper›PMID 34883118›Full record

ArticleJournal of molecular biology2022

Conformational Tuning of Amylin by Charged Styrene-Maleic-Acid Copolymers.

Bikash R Sahoo, Christopher L Souders, Takahiro Watanabe-Nakayama, Zhou Deng, Hunter Linton, Saba Suladze, Magdalena I Ivanova, Bernd Reif, Toshio Ando, Christopher J Martyniuk and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Bikash R SahooBiophysics Program, The University of Michigan, Ann Arbor, MI 48109, USA; Department of Chemistry, Biomedical Engineering, and Macromolecular Science and Engineering, The University of Michigan, Ann Arbor, MI 48109, USA.
Christopher L SoudersCollege of Veterinary Medicine, University of Florida, Gainesville, FL 32611, USA.
Takahiro Watanabe-NakayamaBio-AFM Frontier Research Center, Kanazawa University, Kanazawa 9201192, Japan.
Zhou DengBiophysics Program, The University of Michigan, Ann Arbor, MI 48109, USA.
Hunter LintonDepartment of Neurology, University of Michigan, Ann Arbor, MI 48109-2200, USA.
Saba SuladzeDepartment of Chemistry, Technische Universität München, Garching 85748, Germany.
Magdalena I IvanovaBiophysics Program, The University of Michigan, Ann Arbor, MI 48109, USA; Department of Neurology, University of Michigan, Ann Arbor, MI 48109-2200, USA.
Bernd ReifDepartment of Chemistry, Technische Universität München, Garching 85748, Germany.
Toshio AndoBio-AFM Frontier Research Center, Kanazawa University, Kanazawa 9201192, Japan.
Christopher J MartyniukDepartment of Chemistry, Biomedical Engineering, and Macromolecular Science and Engineering, The University of Michigan, Ann Arbor, MI 48109, USA.
Ayyalusamy RamamoorthyBiophysics Program, The University of Michigan, Ann Arbor, MI 48109, USA; Department of Chemistry, Biomedical Engineering, and Macromolecular Science and Engineering, The University of Michigan, Ann Arbor, MI 48109, USA. Electronic address: ramamoor@umich.edu.
University of Michigan–Ann Arbor · USKanazawa University · JPTechnical University of Munich · DEUniversity of Florida · US

Funding

Integrating Quality Control: Studies of UBQLN2 in Age-Related NeurodegenerationR01NS096785 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI IVANOVA, MAGDALENA I, PAULSON, HENRY L · 2016 to 2020
$3.4M
Membrane interaction and disruption by the Alzheimer's amyloid-beta peptideR01AG048934 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAMAMOORTHY, AYYALUSAMY · 2016 to 2020
$2.0M
NIA NIH HHS R01 AG048934NINDS NIH HHS R01 NS096785
6 · The paper itself

Abstract

Human amylin forms structurally heterogeneous amyloids that have been linked to type-2 diabetes. Thus, understanding the molecular interactions governing amylin aggregation can provide mechanistic insights in its pathogenic formation. Here, we demonstrate that fibril formation of amylin is altered by synthetic amphipathic copolymer derivatives of the styrene-maleic-acid (SMAQA and SMAEA). High-speed AFM is used to follow the real-time aggregation of amylin by observing the rapid formation of de novo globular oligomers and arrestment of fibrillation by the positively-charged SMAQA. We also observed an accelerated fibril formation in the presence of the negatively-charged SMAEA. These findings were further validated by fluorescence, SOFAST-HMQC, DOSY and STD NMR experiments. Conformational analysis by CD and FT-IR revealed that the SMA copolymers modulate the conformation of amylin aggregates. While the species formed with SMAQA are α-helical, the ones formed with SMAEA are rich in β-sheet structure. The interacting interfaces between SMAEA or SMAQA and amylin are mapped by NMR and microseconds all-atom MD simulation. SMAEA displayed π-π interaction with Phe23, electrostatic π-cation interaction with His18 and hydrophobic packing with Ala13 and Val17; whereas SMAQA showed a selective interaction with amylin's C terminus (residues 31-37) that belongs to one of the two β-sheet regions (residues 14-19 and 31-36) involved in amylin fibrillation. Toxicity analysis showed both SMA copolymers to be non-toxic in vitro and the amylin species formed with the copolymers showed minimal deformity to zebrafish embryos. Together, this study demonstrates that chemical tools, such as copolymers, can be used to modulate amylin aggregation, alter the conformation of species.

Indexed as

Molecular ConformationAmyloidAnimalsComputer SimulationDiabetes Mellitus, Type 2FluorescenceHumansHydrophobic and Hydrophilic InteractionsIslet Amyloid PolypeptideMaleatesProtein AggregatesSpectroscopy, Fourier Transform InfraredStyreneStyrenesZebrafishAmyloidIslet Amyloid PolypeptideMaleatesmaleic acidProtein AggregatesStyreneStyrenesamylinamyloidIAPPSMA copolymertype-II diabetes

Identifiers

PMID34883118
PMCPMC8752516
OpenAlexW4226305399

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.