Evidence map›Paper›PMID 34883046›Full record

ArticleCurrent biology : CB2022

Evolution of a novel cell type in Dictyostelia required gene duplication of a cudA-like transcription factor.

Koryu Kin, Zhi-Hui Chen, Gillian Forbes, Pauline Schaap

Open access · hybridAbstract read
In one paragraph

Article in Current biology : CB, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Koryu KinUniversity of Dundee, School of Life Sciences, Dow Street, Dundee DD1 5EH, UK; Institut de Biologia Evolutiva (CSIC-Universitat Pompeu Fabra), Passeig Marítim de la Barceloneta 37-49, 08003 Barcelona, Spain.
Zhi-Hui ChenUniversity of Dundee, School of Life Sciences, Dow Street, Dundee DD1 5EH, UK.
Gillian ForbesUniversity of Dundee, School of Life Sciences, Dow Street, Dundee DD1 5EH, UK.
Pauline SchaapUniversity of Dundee, School of Life Sciences, Dow Street, Dundee DD1 5EH, UK. Electronic address: p.schaap@dundee.ac.uk.
University of Dundee · GBUniversitat Pompeu Fabra · ES

Funding

European Research Council 742288Wellcome TrustWellcome Trust 100293/Z/12/Z
6 · The paper itself

Abstract

The evolution of novel cell types has been proposed to result from duplication of gene regulatory networks, but proven examples are rare. In addition to stalk cells and spores that make up the fruiting bodies of three major groups of Dictyostelia, those in group 4 additionally evolved basal disc and cup cells that respectively anchor the stalk to the substratum and the spore mass to the stalk. We noted a putative group-4-specific duplication of a cudA-like transcription factor (TF) in a comparative analysis of group-representative genomes. Using increased taxon sampling, we here confirmed that this TF, cdl1, duplicated into cdl1a and cdl1b in the common ancestor to group 4. cdl1a, but not cdl1b, showed signatures of positive selection, indicative of functional innovation. Deletion of cdl1a in Dictyostelium discoideum resulted in fruiting bodies with sagging spore heads that lacked the supporting cup cells and expression of cup-specific genes. Deletion of cdl1b resulted in thinner fruiting body stalks, while a cdl1b

Indexed as

DictyosteliumGene DuplicationGene Expression RegulationGenomeTranscription FactorsTranscription Factorscell-type specializationcup gene expressionDictyosteliaevolution of somagene duplicationphylogeneticsPolysphondyliaRNA-seqstalk morphogenesistranscription factor evolution

Identifiers

PMID34883046
PMCPMC8808424
OpenAlexW4200429334

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.