Evidence map›Paper›PMID 34882825›Full record

ArticleJournal of clinical laboratory analysis2022

Comparison of Real-Q 2019-nCoV and DaAn Gene 2019-nCoV polymerase chain reaction assays for the detection of SARS-CoV-2.

Takudzwa Marembo, Prosper Chimbunde, Tendai Chipendo, Clayton Munemo, Portia Manangazira, Donewell Bangure

Open access · goldAbstract readComparative Study
In one paragraph

Article in Journal of clinical laboratory analysis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Takudzwa MaremboAfrica Centres for Disease Control and Prevention, African Union Commission, Addis Ababa, Ethiopia.ORCID https://orcid.org/0000-0003-0293-4088
Prosper ChimbundeDepartment of Medical Microbiology, Midlands State University Faculty of Medicine, Gweru, Zimbabwe.
Tendai ChipendoAfrica Centres for Disease Control and Prevention, African Union Commission, Addis Ababa, Ethiopia.
Clayton MunemoAfrica Centres for Disease Control and Prevention, African Union Commission, Addis Ababa, Ethiopia.
Portia ManangaziraAfrica Centres for Disease Control and Prevention, African Union Commission, Addis Ababa, Ethiopia.
Donewell BangureAfrica Centres for Disease Control and Prevention, African Union Commission, Addis Ababa, Ethiopia.
African Union Commission · ETMidlands State University · ZW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVarious nucleic acid amplification assays for the diagnosis of SARS-CoV-2 infection have been developed, and there is a need to assess their test performance relative to one another. The aim of this study was to compare the performance characteristics of the Biosewoom Real-Q 2019-nCoV assay targeting the E and RdRP genes to DaAn Gene 2019-nCoV kit targeting the N gene and ORF1ab in the diagnosis of SARS-CoV-2.

methodsWe performed a diagnostic comparison study by testing nasopharyngeal samples for SARS-CoV-2 using the two reverse transcription polymerase chain reaction (RT-PCR) assays. Assay agreement was assessed by overall percent agreement, negative percent agreement, positive percent agreement, and Cohen's kappa coefficient.

resultsA total of 48 nasopharyngeal samples were tested using the two assays. One sample was invalid, and three showed inconclusive results with Real-Q; hence, 44 were included for the comparative analysis. Overall, percent agreement between the assays was 93.2% (95% CI 81.3%-98.6%), Positive percent agreement (PPA) was 86.4% (95% CI 65.1%-97.1%) and negative percent agreement (NPA) was 100% (95% CI 84.6%-100%). The kappa coefficient was 0.86 (95% CI 0.72-1.01). Three samples (6.8%) were positive with DaAn gene kit and negative with Real-Q. The fluorescence intensity for Real-Q reporter dyes was low.

conclusionThe two kits showed high levels of concordance in their detection of SARS-CoV-2 despite having different gene targets. The Biosewoom kit can be improved through addressing the fluorescence intensity of the target dyes, and feedback was given to the manufacturer.

Indexed as

Coronavirus Nucleocapsid ProteinsCOVID-19 Nucleic Acid TestingHumansNasopharynxPhosphoproteinsReagent Kits, DiagnosticReverse Transcriptase Polymerase Chain ReactionSARS-CoV-2Coronavirus Nucleocapsid Proteinsnucleocapsid phosphoprotein, SARS-CoV-2PhosphoproteinsReagent Kits, DiagnosticcoronavirusCOVID-19PCRSARS-CoV-2zimbabwe

Identifiers

PMID34882825
PMCPMC8761419
OpenAlexW4200161973

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.