Evidence map›Paper›PMID 34881982›Full record

ArticleMicrobiology resource announcements2021

SARS-CoV-2 Genome Sequences, Including One with an ORF7a Deletion, Obtained from Patients in Bangladesh.

Mizanur Rahman, Rummana Rahim, Abu Hasan, Naoko Kawai, Lavel Chinyama Moonga, Tatsuki Sugi, Kyoko Hayashida, Junya Yamagishi

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mizanur RahmanEvercare Hospital Dhaka, Dhaka, Bangladesh.
Rummana RahimEvercare Hospital Dhaka, Dhaka, Bangladesh.
Abu HasanEvercare Hospital Dhaka, Dhaka, Bangladesh.
Naoko KawaiDivision of Collaboration and Education, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Lavel Chinyama MoongaDivision of Collaboration and Education, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Tatsuki SugiDivision of Collaboration and Education, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Kyoko HayashidaDivision of Collaboration and Education, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan.
Junya YamagishiDivision of Collaboration and Education, International Institute for Zoonosis Control, Hokkaido University, Sapporo, Japan.ORCID 0000-0002-8385-5359

Funding

Japan Agency for Medical Research and Development (AMED) 20wm0225003h0001The Atlantic Philanthropies Director Designated Gift Fund
6 · The paper itself

Abstract

Genomic sequences from a complete SARS-CoV-2 open reading frame (ORF) were obtained from 24 patients diagnosed in May 2020 in Dhaka, Bangladesh. All sequences belonged to clade 20A or 20B, and none were variants of concern. Interestingly, one sequence showed a 161-nucleotide deletion in ORF7a.

Identifiers

PMID34881982
PMCPMC8656380

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.