Evidence map›Paper›PMID 34881097›Full record

ReviewJournal of pathology informatics2021

Deep Learning Approaches and Applications in Toxicologic Histopathology: Current Status and Future Perspectives.

Shima Mehrvar, Lauren E Himmel, Pradeep Babburi, Andrew L Goldberg, Magali Guffroy, Kyathanahalli Janardhan, Amanda L Krempley, Bhupinder Bawa

Open access · goldAbstract readReview
In one paragraph

Review in Journal of pathology informatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  9. Article
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  11. Deep Learning-based Modeling for Preclinical Drug Safety Assessment.bioRxiv : the preprint server for biology · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Shima MehrvarPreclinical Safety, AbbVie Inc., North Chicago, IL, USA.
Lauren E HimmelPreclinical Safety, AbbVie Inc., North Chicago, IL, USA.
Pradeep BabburiBusiness Technology Solutions, AbbVie Inc., North Chicago, IL, USA.
Andrew L GoldbergBusiness Technology Solutions, AbbVie Inc., North Chicago, IL, USA.
Magali GuffroyPreclinical Safety, AbbVie Inc., North Chicago, IL, USA.
Kyathanahalli JanardhanPreclinical Safety, AbbVie Inc., North Chicago, IL, USA.
Amanda L KrempleyPreclinical Safety, AbbVie Inc., North Chicago, IL, USA.
Bhupinder BawaPreclinical Safety, AbbVie Inc., North Chicago, IL, USA.
AbbVie (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Whole slide imaging enables the use of a wide array of digital image analysis tools that are revolutionizing pathology. Recent advances in digital pathology and deep convolutional neural networks have created an enormous opportunity to improve workflow efficiency, provide more quantitative, objective, and consistent assessments of pathology datasets, and develop decision support systems. Such innovations are already making their way into clinical practice. However, the progress of machine learning - in particular, deep learning (DL) - has been rather slower in nonclinical toxicology studies. Histopathology data from toxicology studies are critical during the drug development process that is required by regulatory bodies to assess drug-related toxicity in laboratory animals and its impact on human safety in clinical trials. Due to the high volume of slides routinely evaluated, low-throughput, or narrowly performing DL methods that may work well in small-scale diagnostic studies or for the identification of a single abnormality are tedious and impractical for toxicologic pathology. Furthermore, regulatory requirements around good laboratory practice are a major hurdle for the adoption of DL in toxicologic pathology. This paper reviews the major DL concepts, emerging applications, and examples of DL in toxicologic pathology image analysis. We end with a discussion of specific challenges and directions for future research.

Indexed as

Deep learningdigital image analysishistopathologymachine learningpreclinical safetytoxicologic pathologywhole slide imaging

Identifiers

PMID34881097
PMCPMC8609289
OpenAlexW3209197169

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.