Evidence map›Paper›PMID 34880997›Full record

ArticleChemical science2021

DeepReac+: deep active learning for quantitative modeling of organic chemical reactions.

Yukang Gong, Dongyu Xue, Guohui Chuai, Jing Yu, Qi Liu

Abstract read
In one paragraph

Article in Chemical science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Open-Source Machine Learning in Computational Chemistry.Journal of chemical information and modeling · 2023
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yukang GongDepartment of Ophthalmology, Shanghai Tenth People's Hospital, Bioinformatics Department, School of Life Sciences and Technology, Tongji University Shanghai 200072 China dryujing@aliyun.com qiliu@tongji.edu.cn.
Dongyu XueDepartment of Ophthalmology, Shanghai Tenth People's Hospital, Bioinformatics Department, School of Life Sciences and Technology, Tongji University Shanghai 200072 China dryujing@aliyun.com qiliu@tongji.edu.cn.
Guohui ChuaiDepartment of Ophthalmology, Shanghai Tenth People's Hospital, Bioinformatics Department, School of Life Sciences and Technology, Tongji University Shanghai 200072 China dryujing@aliyun.com qiliu@tongji.edu.cn.
Jing YuDepartment of Ophthalmology, Shanghai Tenth People's Hospital, Bioinformatics Department, School of Life Sciences and Technology, Tongji University Shanghai 200072 China dryujing@aliyun.com qiliu@tongji.edu.cn.ORCID https://orcid.org/0000-0002-4899-0467
Qi LiuDepartment of Ophthalmology, Shanghai Tenth People's Hospital, Bioinformatics Department, School of Life Sciences and Technology, Tongji University Shanghai 200072 China dryujing@aliyun.com qiliu@tongji.edu.cn.ORCID https://orcid.org/0000-0002-6570-7547

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Various computational methods have been developed for quantitative modeling of organic chemical reactions; however, the lack of universality as well as the requirement of large amounts of experimental data limit their broad applications. Here, we present DeepReac+, an efficient and universal computational framework for prediction of chemical reaction outcomes and identification of optimal reaction conditions based on deep active learning. Under this framework, DeepReac is designed as a graph-neural-network-based model, which directly takes 2D molecular structures as inputs and automatically adapts to different prediction tasks. In addition, carefully-designed active learning strategies are incorporated to substantially reduce the number of necessary experiments for model training. We demonstrate the universality and high efficiency of DeepReac+ by achieving the state-of-the-art results with a minimum of labeled data on three diverse chemical reaction datasets in several scenarios. Collectively, DeepReac+ has great potential and utility in the development of AI-aided chemical synthesis. DeepReac+ is freely accessible at https://github.com/bm2-lab/DeepReac.

Identifiers

PMID34880997
PMCPMC8580052

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.